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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0330800.1

GGCACTAGCAAATCTCGGATTAATTTTAATCTTAAGTTTATGCACAAAGGTTTTTTTTACCGAGTACAAAAAGATGAGATGAAACTGTAAAAAGTAAAGGAATGGCGCGGTTACGTGGCGGTGGTAAACGCCGGGGGAGCGGGCGGTGTCGGCGACGGCGAGGTCGAGAGCGGCCGCGGCGTCACGTTCTTGCCGCCGCCGCCGCCGCCGCCGCCGCCGACGGAGAGGGAGCGGAAGAACGTCTTGGGCCGCGGCGGCGCGGCGGCGTCCGCGCCCTGGCGAGCGGAGCGGCTGCGGATGCTGGCCTTCCCGCCGGGGGCGGTGGCGGTGGCCGGGGGGTCCCCCTTGCGCCGCACCGCGGCGCCGTTGCCCGGGATGACGCAGGTGAAGACGACCCCGATCTTGGCGAGGCGGTTGACCCAGCGCGGGATGCGGGCGCGGACGAGGCGGCGGCACGCGGCGTCGCAGAAGTGGTTGCAGTTGCGGGAGACGAGGTTGTAGGCGTCGCCGGGGAAGTCCGCGGCGAGGTCCGCCATGACCGCGCGCACCTCGGCGCGCGTCAGCTCCGTCGTCCCCACCAGGATCGCCTCCCGGAAGGCGTACCCCGGGCACCTCCTCGGCGCCACCTCGAAGATCCCGCTCCCCGCCCCGTCGTGCGCCCCGTACGCGTACTCCACCCCATGAACTTGGACGCCGGAGTGGTAGACGCCGAGGCCGAGCCAGCGCGCGTAGCCGTTGGCGGGGGTGACGTCGTACACGTTGAGGTACACCGGGGACGACGACGACGACGACGACGCGCCGCGAGGCAGCTGCTGCCTTGGGGCCCGGGGCGTGGAGGCGGTGGAGGAGGAGGAGGCCGGTGCCAGCGCCGGCGAGGGCGAGGAGGAGGAGGAGAAGGGCGCCATTCGCGCGGCGCGCCGTGGGTGGGCGAGCGGGCGGGCGCACGCACGCACGTCGCGCGCGTCGTTGTCGCGCCCCGCACCCGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.724223
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0330800.1 6 4063302 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0330800.1 osa-miR5833 Translation 3.5 23.154 1 21
Osa06LNT0330800.1 osa-miR531c Translation 4.0 24.929 1 24
Osa06LNT0330800.1 osa-miR531a Translation 4.0 24.929 1 24
Osa06LNT0330800.1 osa-miR531b Translation 4.0 24.929 1 20
Osa06LNT0330800.1 osa-miR1848 Cleavage 4.0 24.557 1 21
Osa06LNT0330800.1 osa-miR1850.2 Cleavage 4.0 12.912 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0330800.1 6 Lhd1(t) Physiological trait Flowering nan nan
Osa06LNT0330800.1 6 nan Morphological trait Seed RG138 RZ398
Osa06LNT0330800.1 6 nan Morphological trait Panicle/flower RG138 RZ398
Osa06LNT0330800.1 6 nan Physiological trait Source activity RG138 RZ398
Osa06LNT0330800.1 6 nan Morphological trait Panicle/flower RG138 RZ398
Osa06LNT0330800.1 6 nan Physiological trait Source activity RG138 RZ398
Osa06LNT0330800.1 6 nan Morphological trait Seed RG138 RZ398
Osa06LNT0330800.1 6 qSLL-6 Morphological trait Culm/leaf RM204 RM217
Osa06LNT0330800.1 6 qTLL-6 Morphological trait Culm/leaf RM204 RM217
Osa06LNT0330800.1 6 qTLWR-6 Morphological trait Culm/leaf RM204 RM217
Osa06LNT0330800.1 6 alk6-1 Physiological trait Eating quality RM190 RM253
Osa06LNT0330800.1 6 hr6 Physiological trait Eating quality RM190 RM253
Osa06LNT0330800.1 6 d4 Morphological trait Dwarf nan nan
Osa06LNT0330800.1 6 pal1 Morphological trait Panicle/flower nan nan
Osa06LNT0330800.1 6 Qbph6 Resistance or Tolerance Insect resistance RM510 RM314
Osa06LNT0330800.1 6 AsTol Resistance or Tolerance Other soil stress tolerance RZ516 RG213
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus