© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0330900.1
CCTGATGGCAAACCAGTCAAGTGACCTATTCGACAGTGAAGAGTTAAACATTTAACAGATGCAGCGGGGCAGGAGCTAGCAAAACCTGGTAACCTTTAGTACGACAGATTTGATGGTAATCGTTCATCTCAGGCCTGGAGATGTCCAGGCCTCTACAGGATGAGACTAGCTTAGAGTGATTTTTTAGTTTACAACTTGTAATATGGTAAAAGCTACAGCCAGTTTAGCGATTAGATTAGACGAAAAAGGTTCGATATTATCGTTATGATTCCTACAAATTAACTATCGATTTCCATTTTGTCCTCCGCCTTAACAGTGGGTGGCTCCTCCTTCACTGCCTCTATGACTGGATCTTGTACTGGAGGCGTAGCTTCTTTGGAAGCTGACGAAGGCACCTCGGTTGCTGGATCTTTTGGAGACGTGGTCTCTTTGGAGCTTGCATCTAGCATAACTTCCTCTTTGGGAGTGGTACCATTTTCATGGGATCTCAAGATGCGACTAACGTCTTCGCATACAGCTTCAAACTTATGGAGGCTATTGGCTAAACCGGAGGAAGCTGCCTTGTCACCGAAATGCGAGTTGAGTGCAGGAACAGCACTGTCTTCAAGGACAAAGCACATCTTGTTGTAAAGATGGGAAACTTGTGACTGATCAGTTGTGCCTTCAGGCGCCACTTCTTTGGAAATAGGTTCAAGGACAGGCAATTCTCTCAGCATTTCACTGTAGTCTGGAACGGCCGGTCTATGACCACCAGGAAAATCTTGTTCAGCGAGATCATCAGGAACAGGGGTTTTTGTTTTAATCACAGCGTATTCAAGATTCAAACATCTCTCCAAAAGATGGTATCTCTTTCTAATAAACTCAACTATCTTTCTCTGTGTATCCCTGTAATGGATCATGCTCGTTGGGTTCGACTGGCCTTCTTGTGTGCTTTCCAGATTTCCGTTTGTCTCATTGTTTGAGTGAGAACTAATCAGTTCATTAGCAGTAGGAAGCCTCAGCTCTTGTCGTGCAGCCTCAAAAATCCCATTATCTCTGTCATCTGATATATATTGCCACCTTGCATACCCATGCTTTATTAATGCTTTCAGCAACAGTAGATCCTGTTCCGCTTTCCATACTCTTCCACCAACTAAGCTAGGAAATTCATATAACAAATAGCTGGGAAAGAGTTTTGTTATTTTTCCTTGTTCCATGGCAGCCACCTTCTCTTCCACAAGTGATATGTTGGCTAGCCTGACCAATGTCTCATCTGTGCGCATTTCCTTTGGCACGCCATCTGCATAATATCCTGAGTCATTGATGTCCTCAAGAAGATGGATCATGACAAGTTCAGCATATCTCTGGATTTCCTCAACACTTTTCCCCTTCAATCGAGGAGTAAATTCCTTCCAATCGTAGTTCTGAAAACCATATCTCATAAGCGTTTGAAGGAATTGTGTTCGCTGAATTTGGTTGAACCCATAAACTCTCAAAGCCCGTCCTTCGCCCTCCATGAATGGAAGTGAATCAACATTACGTTGTTTTTTCTTGGAATATGGGCCCCTCCTCCCAGCAAGGCCTGATTGTAAACTTGTGTCGTTATCTGACACATCATCATCATAAGAGTAATCATCATCTTCAGAACTCATGTCATGCAGGCCGGTAATGTCGTCCTCATCAGCAGCAGCCATCTGTTTGCGGCTCCTTTTTCCTTTTCCCATAGTAGTATGCTCTTCAACTTTTTGTACATCGTATCTGTCCTTCAATAATTTATCCCAAAAATTTGCTCTGTCAGAGTTTGCAGCTTCAGCTTCGGCCTTTTTGCGTGCCTCCTCCTCTTTTGCAGCTAAAGCCTTAGCTTCATCTATGTACTCAAAGTTAGCAACCTTGAATCCTTTTAGAAATTCGTCTTCTTCTTCATCTTCCACAGGCTCTTCCCCGTCAGCTTGGTCACGGTCCAATAATCTATCAATCGCAGCATCATCATAATGGATTTGGCAAGATTTTCCGGCTTCATCATTTTCATCGTCAAAAAGTTCCTTTGAGCCATGCCGAATAATATCATCCAACTCCTCCTGGACAATATTAGTGCCTTTCGTGAGACGCCCAACAACTAAGTGCTCCAATACCATTTTTTTCTTTGTAAGTTGCATCATCCGCTCCTCAATTGTACCACGACTAACAAGCCTATATATCATAACCTTGCTTGTCTGCCCTAAGCGATGGGCTCTCGCCATAGCTTGTAAATCAGCATGAGGATTCCAATCACTGTCATAAATAATTACAGTATCGGCAGTTGCCAGATTTATACCAAGACCACCAGCTCTGGTTGAAAGAAGAAAGCAAAACCTAGTAGAATTTTTAGCATTGAAGCGATCAATTCGTATCTGCCTCTCAGCACCACCTATTTTTCCATCAATACGCTCATAACTCCATTTCCGGTAGCTTAAATAATCCTCAAGTAAGTCCAACATGTGCTGGAACTGTGAATAAATAAGAACCCTGTGACCCTGCTCTTTCAGTTTCACCATCATCTTGTCAAGCAGCTCCATTTTTCCAGAAGATTCTAAAAGCCTCCTTAAAGCTTCTTCTGAATTGGCAGGCTCTTCGGGTTCATCTGTCATGAATGCATGGCAACAAAGTTTGCGTAGTTCCATTACAACATTAATAAGTGAAACATGTCCACCACTACGACGAGTTAACACTTCATAATTCTTGGTGAGAATTGCTTTATAGTACTCTTTTTGTTTGCTTGTAAGCTCAACACGTAAAATCAGCTCCTTTTTCGGAGGAAGTTCTTTCATAACATCTTTCTTGAATCGCCGAAGAAGATGCGGCTTCAGCATTCCATGGAGCTTCTCAACTTGTTTGTCCTGGTTTATGTCCTTGAATTCCTCTTGGAGATCAGCTATACTACCAAAACTGTCACCCTCAAGGAAGTGCATAAGCATGAAAAGTTCATCCAGGTTGTTCTGAACTGGGGTTCCCGTTAAGAGAACACGATGCTTAGTATGATACTCTTTAAGTTGACCGAACAACTTGGAATCTTTGTTCTTCAAACGATGCCCCTCATCCACAATCATGCATTCCCATTCTATGGTTTTTAGAACAGTAGAATCCATATTGATCATCTCATAAGATGTCAAAAGGACATCAAATTTTATTCTTGATTGTTTCTTGTCTTCATTAGATGGAGATGATTTCTTTTTCTTAAGCTTCTTAGGTTTCTCTTTGGGGTAGTAAAATTCATACTTCCTAATAATTTCACGAGAAGCTGCAGATCCAAAATACATTACAACATTCATTTGAGGTGCCCAAGTTGCAAATTCACGCTCCCAATTTCGCAAGGTTGAAAGGGGTGCAACGACCAGATGAGGACCAAGCTTGTCCACAAATAGAGAGCCCAAAAAGGCAATACTCTGTATCGTTTTACCAAGACCCATCTCGTCCCCAAGTATTACACGTTTATTATGGTACCAAGAATAGCGTAAGAAGTTTAACCCTTCAAGCTGGTAGGGATGTAGTGTCCCACCAGAGAGAAACTTCGGGCTCTCCTTATATTGACGTATCTCACGAGTGACACTCTTGCACTTGTCAGTAGACTTCTTCCTCCTGGACTGAATCTCATTGAAGCGTTCAATCTGAGGCTGAAAGACTGCAATGTCGGAGTCATTTTCCCAAGTACATTCGTCGTATGTTAGTTCCTTCCATTTCACATAGTACTCCCTTTCACCAGTAGAGCTTTTTCTGGTAGCAAGGATCCTGTCAACAGTAGTCCACTCAGGTCTAATTGCAGAATAGTCATCATCAGACTTATCCGTTGAATCCATTTGCTTATGGAAGTTATTGAGTCTAGTTTTCAGCCGGGGGTATATCTTGGCAGTTTCCAAATATTCACTTTCTGAAACCCAAGTGCAGTGAAGGTGTGATATTCCTTTCCATTTTATAAGATATCGTTTGACAGGTTTCTTCTTTGATCCGGACTCAGAAGAACTAGTCTCTTCAGAAGCATCAGGTTTTGTTTCTTCACAGTCTAATATCTTTTCCATTTCCGTAAGAGGGCTAACACATTCAGGGCAGCTCCATTTATCAGATGTGATATTTAAGCGAGGAACCAAACATTTCCTGTGAAATGCATAAGTACAAGTTGAACATGGTACTAGATTGTCATTTTCTCCACATTTCTGGCAAGCATCTTCTTTCGCGTCCTCCCGCTCGATCCGCTCGGTGGGGCCGTCGCTGTGCCGATCCCTCCCCTTCCCGCCCCCGCCGCGCGGCGGGAGGTCATCGTCGGACTCATCGAGCGTGTACAGCGGCCGCTTCTCCGACCGCACCCGCAGCCGCTCCACCAGGCTGCTCATCCCGCCGCCGCCCCCCGGAACTCCCTTCCGGATCAAAACCCTAAAACCACCCACCCTCTCGCCGCGCCGCGCCGCGCCGCCTCGGAGTTGGGGGGGCTAGGGTTTGGTGGTTTTTGGGGGTAGGGAGAGGGGAGCGTACTTATACCGCCGCGTGGGGGAGGGGGAGGGTGAGGTGGCGCGTGGAGAGGAGGCGGCGGAAATGGAAGGTAGTGACGGCGAGGGGAGGCGGCGGCGAGGCGCGTGCCCCTCGTGTGGGCGGTGGAGGAGGCGGGCGGCGAGGGGACGCGTCTCTCTCTCTCTCTTTCTCTGCGTGTGCTCTCGGACTCGGAGAGAGGAGGGGGAGGAGGGAGGCGGTGGTAACGGCCAC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0330900.1 | 6 | 4176613 | A | C |
| Osa06LNT0330900.1 | 6 | 4168970 | C | T |
| Osa06LNT0330900.1 | 6 | 4183222 | G | C |
| Osa06LNT0330900.1 | 6 | 4167326 | T | C |
| Osa06LNT0330900.1 | 6 | 4169258 | C | T |
| Osa06LNT0330900.1 | 6 | 4169278 | C | T |
| Osa06LNT0330900.1 | 6 | 4172132 | C | T |
| Osa06LNT0330900.1 | 6 | 4172661 | C | T |
| Osa06LNT0330900.1 | 6 | 4173835 | T | A |
| Osa06LNT0330900.1 | 6 | 4174247 | A | G |
| Osa06LNT0330900.1 | 6 | 4176133 | G | T |
| Osa06LNT0330900.1 | 6 | 4176591 | A | G |
| Osa06LNT0330900.1 | 6 | 4177668 | T | C |
| Osa06LNT0330900.1 | 6 | 4178432 | C | A |
| Osa06LNT0330900.1 | 6 | 4178833 | A | G |
| Osa06LNT0330900.1 | 6 | 4179158 | T | G |
| Osa06LNT0330900.1 | 6 | 4179536 | G | T |
| Osa06LNT0330900.1 | 6 | 4179683 | T | A |
| Osa06LNT0330900.1 | 6 | 4180174 | G | A |
| Osa06LNT0330900.1 | 6 | 4180660 | G | A |
| Osa06LNT0330900.1 | 6 | 4182162 | A | G |
| Osa06LNT0330900.1 | 6 | 4183084 | G | C |
| Osa06LNT0330900.1 | 6 | 4183488 | G | A |
| Osa06LNT0330900.1 | 6 | 4183801 | C | G |
| Osa06LNT0330900.1 | 6 | 4175595 | C | T |
| Osa06LNT0330900.1 | 6 | 4173655 | T | A |
| Osa06LNT0330900.1 | 6 | 4175089 | G | A |
| Osa06LNT0330900.1 | 6 | 4183900 | A | G |
| Osa06LNT0330900.1 | 6 | 4171132 | G | A |
| Osa06LNT0330900.1 | 6 | 4171114 | T | C |
| Osa06LNT0330900.1 | 6 | 4173090 | T | A |
| Osa06LNT0330900.1 | 6 | 4170320 | C | T |
| Osa06LNT0330900.1 | 6 | 4170535 | T | C |
| Osa06LNT0330900.1 | 6 | 4170723 | G | A |
| Osa06LNT0330900.1 | 6 | 4172162 | A | G |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa06LNT0330900.1 | DTM_#DNAt_MULE_japo_Os0372 | Chr6 | - | 4172973 | 4173598 | 625 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0330900.1 | osa-miR5538 | Cleavage | 4.0 | 15.241 | 1 | 22 |
| Osa06LNT0330900.1 | osa-miR1319b | Cleavage | 4.5 | 11.389 | 1 | 24 |
| Osa06LNT0330900.1 | osa-miR5832 | Cleavage | 4.5 | 21.955 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR1440b | Cleavage | 5.0 | 14.632 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR818f | Cleavage | 4.0 | 14.563 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR818f | Cleavage | 5.0 | 14.318 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR393a | Cleavage | 5.0 | 20.444 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR399a | Cleavage | 4.0 | 18.84 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR399b | Cleavage | 4.0 | 18.84 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR399c | Cleavage | 4.0 | 18.84 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR399d | Cleavage | 4.0 | 18.84 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR399e | Cleavage | 3.0 | 18.84 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR399f | Cleavage | 3.0 | 18.84 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR399g | Cleavage | 3.0 | 18.84 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR399h | Cleavage | 4.0 | 18.84 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR399i | Cleavage | 4.0 | 18.84 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR399k | Cleavage | 2.5 | 18.84 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR169f.2 | Cleavage | 4.5 | 15.554 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR169f.2 | Translation | 5.0 | 15.346 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR172c | Translation | 3.5 | 15.528 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR166j-5p | Translation | 5.0 | 15.47 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR529a | Cleavage | 5.0 | 18.369 | 1 | 20 |
| Osa06LNT0330900.1 | osa-miR535-3p | Translation | 5.0 | 18.994 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR395w | Translation | 3.5 | 17.465 | 1 | 22 |
| Osa06LNT0330900.1 | osa-miR395w | Translation | 5.0 | 12.571 | 1 | 22 |
| Osa06LNT0330900.1 | osa-miR1442 | Translation | 5.0 | 14.705 | 1 | 20 |
| Osa06LNT0330900.1 | osa-miR1857-3p | Cleavage | 5.0 | 21.341 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR1428e-3p | Translation | 5.0 | 18.497 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR2055 | Cleavage | 5.0 | 14.609 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR2100-3p | Translation | 3.0 | 15.966 | 1 | 22 |
| Osa06LNT0330900.1 | osa-miR2867-5p | Translation | 5.0 | 21.642 | 1 | 22 |
| Osa06LNT0330900.1 | osa-miR5144-5p | Translation | 4.5 | 17.565 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR5340 | Translation | 5.0 | 8.447 | 1 | 23 |
| Osa06LNT0330900.1 | osa-miR5340 | Cleavage | 4.0 | 21.694 | 1 | 23 |
| Osa06LNT0330900.1 | osa-miR5491 | Translation | 5.0 | 13.686 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR5507 | Cleavage | 4.5 | 12.268 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR5508 | Translation | 5.0 | 15.629 | 1 | 21 |
| Osa06LNT0330900.1 | osa-miR5160 | Cleavage | 4.0 | 13.003 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0330900.1 | 6 | d4 | Morphological trait | Dwarf | nan | nan |
| Osa06LNT0330900.1 | 6 | pal1 | Morphological trait | Panicle/flower | nan | nan |
| Osa06LNT0330900.1 | 6 | Qbph6 | Resistance or Tolerance | Insect resistance | RM510 | RM314 |
| Osa06LNT0330900.1 | 6 | AsTol | Resistance or Tolerance | Other soil stress tolerance | RZ516 | RG213 |
| Osa06LNT0330900.1 | 6 | Lhd1(t) | Physiological trait | Flowering | nan | nan |
| Osa06LNT0330900.1 | 6 | nan | Morphological trait | Seed | RG138 | RZ398 |
| Osa06LNT0330900.1 | 6 | nan | Morphological trait | Panicle/flower | RG138 | RZ398 |
| Osa06LNT0330900.1 | 6 | nan | Physiological trait | Source activity | RG138 | RZ398 |
| Osa06LNT0330900.1 | 6 | nan | Morphological trait | Panicle/flower | RG138 | RZ398 |
| Osa06LNT0330900.1 | 6 | nan | Physiological trait | Source activity | RG138 | RZ398 |
| Osa06LNT0330900.1 | 6 | nan | Morphological trait | Seed | RG138 | RZ398 |
| Osa06LNT0330900.1 | 6 | qTLL-6 | Morphological trait | Culm/leaf | RM204 | RM217 |
| Osa06LNT0330900.1 | 6 | qTLWR-6 | Morphological trait | Culm/leaf | RM204 | RM217 |
| Osa06LNT0330900.1 | 6 | qSLL-6 | Morphological trait | Culm/leaf | RM204 | RM217 |
| Osa06LNT0330900.1 | 6 | alk6-1 | Physiological trait | Eating quality | RM190 | RM253 |
| Osa06LNT0330900.1 | 6 | hr6 | Physiological trait | Eating quality | RM190 | RM253 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)