© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0001700.1
GCAAGGAACAAGCTATAGGGTGGGGACAAAAATTTACATGGCGTCCATGGTCATTGATCTCTCTGAAATCATGCATATCAATAAGAACAGGAGTTACAGGCAGCTTACATGCAGCTCTCCAAGTCCCAGAAGCTAAAAATACTTAATTTACTTAAGTACTACTAGTGCTAATTACCTAGCCAGGGAGAGGGATCTTAGTACGGATCAACTACGGACGTAGGCAGCTAGTAGGTAATTAATTCTTTTTTACCATAGTAAACAGTAGCTAGCTCGCTCTCGCGCAGTAGTGTGGCCGGATCGTCGTCGTCGTCGTCGACCACGCGCGCGAACTCATGCAAGCGCGGCGGTGAAGTCACAAGCCGGCGGGCGCAAGGCTGAGCTGGAGGTCAAGCCCCAGGCAGGTGTCCTCCGGCACGGTGGCCACCGGCTCCGCCACCACCATCGCCGGACCGGGATATCTCGCAAGGCTGGCCGCCGAGCTCGCGTGGATCCTCCGCCCGTGGTGCTCGTCCGTCGTCACGTAGGGTGCCGAGGCCGCGGCGACGGCGGCGGCAGACGTCGCCGGAGTGTACGAGAACACAGCCGGCGAGGCGGCGGCGACGGCGGCAGGGCCGGCGCCGCGGGCGGGGAAGACGCAGCCGTGGGACACGTGGAACTGCTGGCCTTGCGCCCCGCCGGCCACCGCGGCGGCGCGCGGGGAGAAGTAGACCCAGCTGGTGGGCCCCGCCTCGCCGCCGCCGAGGAGGTGGGGGGTCGGAGCGAAGGCGGAGACCATCGGGTTGGCGCGCGGGTAGAGCGCGGCGGCGCCGCCCGCGACACGGCCGGCGGCCGCGGCCGCCGCCTGCAGCTGCGCCCGCTTGAGCTGCTGCCGCTCCTTCTTGTGCGCGTTCTGGTGGCCGCCGAGCGCCTGCGAGTTGGCGAACTCGCGGCAGCAGTACTGGCACTCGTACCTCCGCCCGTCGCCGCCGGCCGTGGCCGTCGTGGTGGTCGTAGTAGACGACGAGGACGAGTCCGAGCCGCCGCCTCCGCCGCCACCGTTGCCCCCGCAGACCGGCGCGCTCTCCGGCTCAGCCGAGTACTGCTCCTCGTGCTCCGCCGTCTCCTCCTCGGAGACGTCGAAGCCGAAGAGCTTTAGCCTGGGGCTCGTCATGCTCATGGCTGCAAAGACGAGTAGCTAGCGAGCAGCACACTGTAGAAGCTTGGCACTGGTGGTACTTGCTACAGAAGAAGAGAACTAAGAGAGAAAGAGAGCTAAGCTGCAGTGAGTTGCTGTCAAATTAAGTTGGATGGATGTGCATGGGTTGGAGCTGTGTCAGGTGAGAAGGGGCAGTATATATAAGACCTGGAGCTGCAGGATTTGCACAGGCGAGAATGGATATATCATGGAGCTCATAGCTAGGCAGGTGAATGATTTGAATACATGCAGCATGTACACAATATTATATCCCGGCCTCTTGCACTTTAGAGGGAGAGGGACGATCGATGCAAAGTAGGAAAGAGAGAGAGATTAGTAGTAGTATGAGTTGGAGTACTTGTGATGAACAGGAGAAGCAACACACACACAGAGGTCACAAGAGACAGGTCGAGGTCTAGATTGCGCTTGTCTCGGCTCCATGTTGCACTATTTTATGTGCTCGTCTTCCTCGTTGATTTGTTAATTACTACCGGGGCTAGAGGCACACGCATGATAGGATATTTAGATATATAAATAAATATATATATGAGTACTATATGTATATCTTTGTAGGCATGTAGCTTAGGTCTGTGGCCAACTAATACGTACTAGGGCTCATTTCTTAATCAAAGCTGGATCGACCGATGCATGCAGCCGGATGCTCAATTATGTTGTTTTGTGTACGTAATGCAAATAGTTTATACCGATAGAGTCGCGGTGTTGTGTAGAGGAGAGGCAACGGAATACAATATAATTTTATTCAAGGGTTCCTGGTTGTTACGGCGCTTTTGTACTTATATATAACTGTGTCTATGTATTAAATATCTTAATTTGCCTTGTATTATGGCTCGATCGATGTATGTAGAAAGAGATAAGAGATCAGTGAGGGACCATGCATGTGCAGGAGAGCTAATTAATTAAGTGGGTGCCACTTAGCTAAGCTAAATTATACCCGATTGTTCAACTTATTCGATCTGCGCGTGTAGAGTACAAACTAAAGTTGCAATGCTCATGCGTGTTGGGGTTGGACTATATGCTTTTTAAAATTCTCCATGTAGAAATGTATATGATGCAGAAGAGTATAGCAGTAGTACGTACGTAGGAAATGTACATGTACTGATGTACGTACGTATTTGCTCCGTTTTGTTCCGTTGTGTGGGCTATAGCTTTCAATTCCTATCATGATGATGGATGACCTCGGCAAAGAATCGCCTTTGAGTCCCATCCCTGGAATCAATATTATGTCTCTTAAAAGCTCAGCTGATGCGGTGGGTTTTCTTGTCTTTGTACTTGCCATAGGCGTCATTTGTAGAGAAAAGACAACTCCTGAGAGGTCATGCAAGTGTGTGGGATAAGTGTGTTAAATGCCTCATCAAATGATAACAATCACGCATGCTGGACAGAGCTAGCCCACATGGCATTCCACGTAGATTGTGCAAAGTACCACGTCCGACACTTCCAATGATATTGATGATGCGTATTTATGCGTCCTCAGCAAGTATATCCAAGCCTCTTAATAATTCTCAAACACTGTGGAACTTGTACTTCTGAACCAGATTGAATCTCTCAATACTTCCACTAAAACCCTTCAACACAAGAGTTCTCACAGCATCCACCCCTTGCTCCAAAGCAGTGTCAATCTGCAGCCGTTCCTCTGAACTGAACTTCTGCAGAAGAAAAGCACGCGTGTCCATTTTGCCGGGTGGGCTACCAATGCCTATAGATAAACGAGGAAGTTCACGGGAACTGTCCAAACATTCCATTACGTTCTGCAGGCCATTATGGCGACCATGACCACCTTTCCGTTGAAGACGCAATACACCATTGGGTAGACTCATCTCATCATACATCACAAGGATATGCCGCAATGGTACTTGATAATAGGCAGCAAGAGGTCCAATTGCCTCCCCACTGTAGTTGATATATGATTGTGGCTTTACCAACAAGACAGGCACTTCCCCAATCGAACCTATTCCGAGCAGCGACTTGGACTGGATCGTGTTCATGGTGATCCCCTCGTCTCGCGCGATGCGATCGACCATCTCAAACCCCACGTTGTGACGCGTGCCGTGGTACTTGCTGCCGGGGTTGCCGAGGCCGGCGATGAGCCAGGGCGTGTACTCCGCCGGCCGCGCCGCGGGGTCGGGGACGGACGCGACGACGGCGATGCGGCGCCGGAGACGGGTGCGCCGGAGAGGGGCGGCTGCGGAGAGGAGGAGGCGGCGGCGGCGGCAGGGTTCGGGGGAGGAGGTGGTGAGCGGGGAGAGGCGGGCGGAGGCGGGAGTGGCCACGGCAAGCGACATGGCGAGGGGAGAGGAGAAGCGGAACCGATAGGGCGAGAGGAGATTTC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0001700.1 | 1 | 1803552 | T | C |
| Osa01LNT0001700.1 | 1 | 1803694 | T | A |
| Osa01LNT0001700.1 | 1 | 1804255 | A | G |
| Osa01LNT0001700.1 | 1 | 1804539 | T | A |
| Osa01LNT0001700.1 | 1 | 1805516 | G | A |
| Osa01LNT0001700.1 | 1 | 1805709 | G | A |
| Osa01LNT0001700.1 | 1 | 1805816 | C | T |
| Osa01LNT0001700.1 | 1 | 1806581 | T | G |
| Osa01LNT0001700.1 | 1 | 1803458 | G | A |
| Osa01LNT0001700.1 | 1 | 1806994 | C | T |
| Osa01LNT0001700.1 | 1 | 1807088 | T | G |
| Osa01LNT0001700.1 | 1 | 1807613 | A | G |
| Osa01LNT0001700.1 | 1 | 1808043 | G | A |
| Osa01LNT0001700.1 | 1 | 1808141 | T | C |
| Osa01LNT0001700.1 | 1 | 1809498 | T | G |
| Osa01LNT0001700.1 | 1 | 1809586 | T | C |
| Osa01LNT0001700.1 | 1 | 1809931 | C | T |
| Osa01LNT0001700.1 | 1 | 1810294 | G | A |
| Osa01LNT0001700.1 | 1 | 1810356 | C | T |
| Osa01LNT0001700.1 | 1 | 1811077 | A | G |
| Osa01LNT0001700.1 | 1 | 1811199 | G | A |
| Osa01LNT0001700.1 | 1 | 1811565 | T | C |
| Osa01LNT0001700.1 | 1 | 1812089 | T | C |
| Osa01LNT0001700.1 | 1 | 1812835 | T | A |
| Osa01LNT0001700.1 | 1 | 1812935 | T | A |
| Osa01LNT0001700.1 | 1 | 1814169 | T | C |
| Osa01LNT0001700.1 | 1 | 1814358 | T | C |
| Osa01LNT0001700.1 | 1 | 1814853 | A | G |
| Osa01LNT0001700.1 | 1 | 1815124 | G | T |
| Osa01LNT0001700.1 | 1 | 1815665 | T | C |
| Osa01LNT0001700.1 | 1 | 1816581 | G | C |
| Osa01LNT0001700.1 | 1 | 1817209 | A | C |
| Osa01LNT0001700.1 | 1 | 1817351 | A | G |
| Osa01LNT0001700.1 | 1 | 1817550 | A | G |
| Osa01LNT0001700.1 | 1 | 1806093 | C | A |
| Osa01LNT0001700.1 | 1 | 1814128 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0001700.1 | osa-miR5529 | Cleavage | 4.5 | 11.149 | 1 | 21 |
| Osa01LNT0001700.1 | osa-miR5792 | Cleavage | 4.5 | 24.985 | 1 | 24 |
| Osa01LNT0001700.1 | osa-miR528-3p | Cleavage | 4.5 | 15.484 | 1 | 21 |
| Osa01LNT0001700.1 | osa-miR814a | Translation | 5.0 | 12.392 | 1 | 22 |
| Osa01LNT0001700.1 | osa-miR814b | Translation | 5.0 | 12.392 | 1 | 22 |
| Osa01LNT0001700.1 | osa-miR814c | Translation | 5.0 | 12.392 | 1 | 22 |
| Osa01LNT0001700.1 | osa-miR1875 | Cleavage | 5.0 | 21.264 | 1 | 24 |
| Osa01LNT0001700.1 | osa-miR1846e | Cleavage | 4.0 | 17.503 | 1 | 20 |
| Osa01LNT0001700.1 | osa-miR2864.2 | Cleavage | 5.0 | 18.894 | 1 | 21 |
| Osa01LNT0001700.1 | osa-miR2866 | Cleavage | 4.5 | 19.47 | 1 | 20 |
| Osa01LNT0001700.1 | osa-miR2866 | Translation | 4.5 | 17.9 | 1 | 20 |
| Osa01LNT0001700.1 | osa-miR2924 | Translation | 5.0 | 17.077 | 1 | 21 |
| Osa01LNT0001700.1 | osa-miR5147 | Cleavage | 5.0 | 10.828 | 1 | 21 |
| Osa01LNT0001700.1 | osa-miR5155 | Translation | 4.0 | 13.143 | 1 | 24 |
| Osa01LNT0001700.1 | osa-miR5486 | Translation | 4.5 | 12.743 | 1 | 21 |
| Osa01LNT0001700.1 | osa-miR5487 | Cleavage | 2.5 | 19.014 | 1 | 21 |
| Osa01LNT0001700.1 | osa-miR3979-5p | Cleavage | 5.0 | 18.819 | 1 | 20 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0001700.1 | 1 | n+p1a | Resistance or Tolerance | Other soil stress tolerance | C161 | R753 |
| Osa01LNT0001700.1 | 1 | n+s1a | Resistance or Tolerance | Other soil stress tolerance | C161 | R753 |
| Osa01LNT0001700.1 | 1 | yd1a | Morphological trait | Seed | R753 | C161 |
| Osa01LNT0001700.1 | 1 | nan | Physiological trait | Eating quality | C161 | R753 |
| Osa01LNT0001700.1 | 1 | nan | Physiological trait | Eating quality | C161 | R753 |
| Osa01LNT0001700.1 | 1 | nan | Physiological trait | Source activity | RG532 | RG472 |
| Osa01LNT0001700.1 | 1 | qFLP-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0001700.1 | 1 | qFLL-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)