Transcript

Sequence

>Osa06LNT0331100.1

TCAAATTTCAATTTTTATGGGCCACATGTACTAGTGGGCCGGCTACCAGCCCACGTGCCACTACAGTAGCCGTGCCGGCCCGGCACGGCCCAGCACCTTCTTGGGCCGTGCTTGGGCCGTGGCCTTGGCACGTGGGCCGGCACGGCACGGCCCGCTATAGGAGCCGTGCCTAACGGGCCGTGCCCTAGTGGGCCGTGCCGTGTCGTGCTGGGCCGGGCCGCCCGTTTGGCCTGCTATAAACGTAGCAGTACACTAGTACAGTACTACAAACTTGACGAGGGAGAGGACCGAATATGCAGCAATCAGCATTGGTAAAAGCTTAAGCGCATGTGCGCCAATTGACATCCCCTGTGATACTGCAGACGACATGCGCAAGTATGAGCATTATCAACCTTCGAGACTTCTCTCCCACCAGTACACTAACTAAAAGTTATGTAATGTTCCCAACCTTTTGAAATGAATAAAGGTTTAGGCTGGCAAAAGCCAGCCGTAGTTCCCTTCCGAAGGGTATAAGCATCGAGATTTCTGACATGGCTCTGTTTGGATTTAAGAGATATTTTTTAGCCCTCTCTTAAATAGCCCAAATAGCTCAAAAAGATTCAAAAGGGTGAGCTATTTGAGAGCTATTTGGAAATAGCCCACCCAAAAAAACTATCCCACCCAAGAGGGAAGAAAATTTGGTAAGACTTAAGTCCTACGCTTATCCGAAAGACTCTGCTTCCCGCACGACACCTGTCCGCACAAATCTTAAGAGTAGCGAATATCTCTTTTGTACCCTTTCTTCTTCCTCCGGCCAGGGACTTGGCGACAAATCCAACTCGCTCTTAGGACCGAGGGTCCAGCATCTTCAGACGTAGCAAGGTCCGGGGGCAAGGTCTGGAGCAGAGTTTCCGGTTGCCACCGCACCCGTCATGCTTCTTCCATGGAAAATATTCACCTTAAAACCTATTGACGGCGGTTGGGTTGAGCACGAGGTCGATGCCGCTGCGCCTCCTTGGCGCCCCCTTTCTTCAACACATCGTCCAGTGCTGCTAGCTGTGACCTCGCCGTGGCCAGAGATGCCAGTCAAACTGTGGGCTTGATGCCTTGCCGGCGGCCGGCCGGGTAGTACGAAGATGGGAGATTGGAGAAGAGAGAGAGGAAAGAGAACTGTTGGGAGAAGAGACTTGCTGCTCTAAGATTCGTTTGGACAGGTGTCGTG

Coding Potentia

Explanation	CPC Score
noncoding	-1.16656

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0331100.1	6	4424922	C	T
Osa06LNT0331100.1	6	4424925	A	G
Osa06LNT0331100.1	6	4424964	G	A
Osa06LNT0331100.1	6	4424992	T	G
Osa06LNT0331100.1	6	4424987	T	C

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0331100.1	osa-miR7694-3p	Cleavage	4.5	24.155	1	22
Osa06LNT0331100.1	osa-miR529a	Cleavage	5.0	10.779	1	20
Osa06LNT0331100.1	osa-miR2118l	Translation	5.0	8.649	1	22
Osa06LNT0331100.1	osa-miR2275d	Cleavage	4.0	12.21	1	22

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0331100.1	6	Qbph6	Resistance or Tolerance	Insect resistance	RM510	RM314
Osa06LNT0331100.1	6	amy6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0331100.1	6	asv6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0331100.1	6	AsTol	Resistance or Tolerance	Other soil stress tolerance	RZ516	RG213
Osa06LNT0331100.1	6	alk6-1	Physiological trait	Eating quality	RM190	RM253
Osa06LNT0331100.1	6	qLDLJ-6-1,2,3	Physiological trait	Source activity	RM217	RM3
Osa06LNT0331100.1	6	qRCRJ-6	Physiological trait	Source activity	RM217	RM402
Osa06LNT0331100.1	6	nan	Morphological trait	Seed	RG138	RZ398
Osa06LNT0331100.1	6	nan	Morphological trait	Panicle/flower	RG138	RZ398
Osa06LNT0331100.1	6	nan	Physiological trait	Source activity	RG138	RZ398
Osa06LNT0331100.1	6	nan	Morphological trait	Panicle/flower	RG138	RZ398
Osa06LNT0331100.1	6	nan	Physiological trait	Source activity	RG138	RZ398
Osa06LNT0331100.1	6	nan	Morphological trait	Seed	RG138	RZ398
Osa06LNT0331100.1	6	qNP-6	Morphological trait	Culm/leaf	RZ450	RZ588
Osa06LNT0331100.1	6	qLW-6	Morphological trait	Seed	RM217	RM111
Osa06LNT0331100.1	6	hr6	Physiological trait	Eating quality	RM190	RM253
Osa06LNT0331100.1	6	qSPTF6	Physiological trait	Sterility	RM217	RM111

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus