>Osa06LNT0331600.1

GAGGAAAACAAGAGTATATATATATTGCCTTTGGAAAATAGAAGTGATAATTACATTTTTGTTAAAGAATATCAATTGCAAGTGATAAAACATAAGACGTGATCAGTTACTAAACTATGCATAGAACTGTCTAATCCAACACGGCCTGCCGCCTGCGGTGAAGCATGGCTAGTTGCTGAGTGGGAACATCCCAGACTAATTTCTGCAGCAGATTATTGGTTAATACCTACAATAAATGAAGAGATGGAGCATTCTTGTTTTTATATTTCCAGAGCACGCTCAGCATGACCATGTAATTCATACTGTCTGGATGGAATTTGCAGGCACAGGGCCATTCTGAATTGGTCGAGGCTCTCCGCCATCAGCTAGCACGTTCGACACTCCCATGGATATCCTGGGAACTGCCAATTCTAACTTCATGGAGGTGTATATCAACCACAATGCAACCCATGCTGTTCTGTGCTTGATTAGATTCTTCATGTGCATCGTTTCGACCACCCACATCAGGACTTTGCACATCAGAATCTCTAATTTGGGTGTAATTGGCAAGAATTGACATGGAGAACCTAATCATCAGCATGAGAGTTGAGATACACCCAGTGATGATAAAAAGACCAGAGAAACTCCGCAAAGTGAGAGGTGCCGAATCTGTGTTGGGAATTGCATTACTTGGAGAGACAGCCTCTGCACCAAACCATTTCGTTTCCATACGTGACCCCTCATCCCCACTTGTTACATCCAACATGGCAGTTGAAAGATTATGCACCAGTGGAAAACCAGGAGGAAACACAAAACCAAAACCGGGAGTCTTATATATGCGCTTAAGCATCTGGAATTCTTTCTGGTAATGAGGGTCTGAGACAATAGCGGTTAAATATGGGATCTCATCAACGATAGCAGACACACCTCCATTCTTGGACCCCTTCCTCAAAGCTTCAGCATATTCCTGTTTCTTTGTGTAGGATCTTAGCCTTCTTTCACTGAAACCTCGTCTTGTCAAAAATGAGTTCACAAAGGATCCCTCTTGGTATCCAACATAATCACCATTATTCAGGAGCTGGTCAAGATATGTCACTGAGGGCTTGAACCTCTTTACAGTTAGAATGGATGAAAAGCTAGCAGTGTAGCTCTGCACAAGAACCAGCACCACGAAGCACCAGATTACCACAACGATTTTTGACAAAGGACTTTTAATAATTTGACCATGAGAAAATGTCAAAGTGGAGAAAGCAAAATAGAGAGCAGTGCTCAACTGCCTTGTGTTCGATCCTTGGTACTCCATGTTTCTGGGATGTTCAATTATCCAAATTACTAATGCGGTGAATAGAAAGAAGATCACAGTGGCAAACCAAAGTTCTTTTGTCAGTGGCTTCAAGAATACCCATTCGATTTTTGATTCAGATTCATTCTTCGCAAGCACAAGCATTGAAACACCAGACTCGGTGTACGGCATTGTGAACTCCACATGGCTAGCTCGATCGGCAATTATGGTTATATCCCCCACTGCTGCATCGTTGATCCCTGAAGATACACTCTGTACTAGCTCGTCATAAGAACGGTCGAAGACAACAAACTCATAAATCAGACGGTATGGTAACTTATTCACGGCAGCCTCGAAGAGATCAATGCAGTAGCCAGTGACACCTTGGTCAGTTACATTCACAAAAGCTCTAAAGCCATGTTTCAGTGGCACAGCAATCTTGAGTTTCTTATGATAAACTTCAGGCAAACATCCTAAGTTCCTCCTCACTCCAGCATTTATCCTCTTGGTTTCTCCTCAACTTAGATGGACGGATGGATATGGGATCCACGGCCTTTAGGGGTTGGGTGCCGAGGAGACACCGGAGGGCAAGACATGGCACGGCACAGGGGCGTACGTGATGGAGGCGGCAGGGGCAGGCAGGTATGGCGCGTCGTCGTCCCTCCCTCCGCCGCGCGCCAGCCTCCGTCGTCCCTCCGCGACGGACGGCCGAGACCGTAGCCGTGCGCCCTCTGCGCGCCGCCTCCGCCGAAAGCGCGCTTGCAGCTAGCTAGCCGCGCCGCCGAGAAGGCCGAGATGAGTGTGGACC

Explanation	CPC Score
noncoding	-1.19572

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa06LNT0331600.1	DTM_#DNAt_MULE_japo_Os2088	Chr6	-	4574091	4575372	813

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0331600.1	osa-miR528-3p	Cleavage	3.5	16.671	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0331600.1	6	AsTol	Resistance or Tolerance	Other soil stress tolerance	RZ516	RG213
Osa06LNT0331600.1	6	qLDLJ-6-1,2,3	Physiological trait	Source activity	RM217	RM3
Osa06LNT0331600.1	6	alk6-1	Physiological trait	Eating quality	RM190	RM253
Osa06LNT0331600.1	6	nan	Morphological trait	Panicle/flower	RG138	RZ398
Osa06LNT0331600.1	6	nan	Physiological trait	Source activity	RG138	RZ398
Osa06LNT0331600.1	6	nan	Morphological trait	Seed	RG138	RZ398
Osa06LNT0331600.1	6	qNP-6	Morphological trait	Culm/leaf	RZ450	RZ588
Osa06LNT0331600.1	6	qRCRJ-6	Physiological trait	Source activity	RM217	RM402
Osa06LNT0331600.1	6	nan	Morphological trait	Seed	RG138	RZ398
Osa06LNT0331600.1	6	nan	Morphological trait	Panicle/flower	RG138	RZ398
Osa06LNT0331600.1	6	nan	Physiological trait	Source activity	RG138	RZ398
Osa06LNT0331600.1	6	qLW-6	Morphological trait	Seed	RM217	RM111
Osa06LNT0331600.1	6	qSPTF6	Physiological trait	Sterility	RM217	RM111
Osa06LNT0331600.1	6	hr6	Physiological trait	Eating quality	RM190	RM253
Osa06LNT0331600.1	6	asv6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0331600.1	6	Qbph6	Resistance or Tolerance	Insect resistance	RM510	RM314
Osa06LNT0331600.1	6	amy6-1	Physiological trait	Eating quality	RM3	RM217

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus