© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0332400.1
TCCGAGGCGGAGTAACGATCGACTCACATATATAGGAATTCCGGCTGCCGGAAAGGAAAGTAATATACCAGAAGATAAAACACTTTACAACATGAACAAAATGAGTACAAAAGTTGGATAAAAAATTAAAATTAATTTGAATTATAGGGCTTTACTCTCTCCGAAGAGAAAGAGCCCTTCCAGAAATTCTCAGTGGCCCAGGTGGGCCAGAGAGGGGGTTTGGAAATAGTTTTCAACCAGCAATAGACGCGCCTCGGTATAACCTCATAAGCTGCGTCATTGCCCCAAGCGCAAAGATGCCATCAAACGTTAGCCCACCTCCCCTCTTTATACCCGCAGCGCTCCCGCACATCTCCCTGGACAGCCGAGGTGGTACTAAAATTGTGAAACGGAGGGAGTAACACATACGGCTTGTACAGTGTTGAATTGTTCATGCAAGGTGATCAAGATTCAAGAAAGCCAAAATAATCAAGCCATCCCCTCCCGCATATCTTCATAAAGCATTTAGAGCATCGACATACCATAGAGGCACGAACCAATGAAATCACCATAGTTAATAACACCAGCTTAACCCGCACTGATAGTCGTGTGATGTGATGTGAAGTCATGTAACAATGTATCTCATGTTCCTGACAAGATTAGTGCATGAGTGCAACAGATAAGCAAGAATAATTGAATTGCAGGGGTTTATACTAAGCTGGTTTCATTCACCCCCATCAGGCAGCAACATGCTCACACAATCTGGAGGAATAATATATCAGATCTTCTGCGTTATCAAATCACCAATAAAATTTAAAATATCACGTGAGGTTTTGTTGTTTTGCATCCCAGTGTCACAGAGTGAAATATGCTATCTTCACCATTTGTTCATCTCTCGGATGAAACAATCAAATACTATGTTCTCTAAAGAACAAACTTCGATCGCACTACCTAATGTGAGCAATGAACACCACGGTAATATCACCATTGCTTCTCACTGATGTAGGCAAATCTGACACTAAGTAAAGCAAATACTACTTCAGAACCTCCTGTGTGCTTTGTTGTTTAACAAATTTCCCTCTCCGAGGCCCTCTTTTAGATCTCTTTGCTATGGCAAGACCCTGTTTTTTCATTTTCTCCAATTTTTCTTTCCTTCCTTTTATATCAGCTTTAATAACTTCATCCCTGCTTTCTTCTGACAATAGAGCTAGTCTGGAAAACTTCTTTGGCCATACTTCTCCAAGTCGCTCATGTATATCTTTAAATACAGGTACAAGACCGGCTCTCATGAAATATCCTTCAGTAAGCTTCATTGAGTTCGTTTTAGGAAGAGCGGGAGCATCTTTCAACTCAAGGTCCAGGCAAAAAGGAGAGTCTTTCAGCCACATCTTAAGAGAGTAAGCCTTCACCACAAAGCGACCTGACCGACTTCTGCATGGTAGGAAAGGGGAGCCCATTTCCAAAAGGTAAGCCCTGATAGTTTTACGCAAGGATACCATGTTATATTCCCCCTCTCCTGTGACCAATACAATAGATTTGGGGGATTCTGGTGCACCCTGCAGTGAAGCATCTTGCATCTGATCAAGCCACAATGTTAGAGCAACAAGAGCAGCCCCAGCAGACAACTTGCGTAAGTCAGCTCCCCAATCTTTTTCTTCCACTCGAAAGATATTATGATGGTATATGCTTCTTTTTACAGCCAATTGGAAAATCCATGAAGCGGTTGCTCGACGTTCAAATGCCCATAACAGGTCTTCCAGTGCATTTACAAAGTTCAATGAAGCAGAATCTTCTAGTGTCCCAAGTTTTTCTAGAAAGCTGTCAACCTCAGTAAACAGAGACGAAGTCCTCTCAGTAAGGAGCCTAATGGGAAGGTCAAATCCACAATCCTGCAAAGACTTTAGAAGAAGAATGGCATCATCAGTCTGCTCGCACAAACTAGCAGCCCTGATGAAACTTGTCCAGACTTGATGATCTGGTTCTACACCATCTCTTTTCATTTCTAAAAGCTTTGTGATTCCAAGACTGTAGTCACGATTTCTCAAGTAAGCATCGAGAACAGTACTGTATGGTAAAGTGCTAATTTCCAAATTAGAAGATTTCAAGCTGTTCAGGACTTTCTCAGCTTCGTCTGGGTGCCCAGAAGTCCCATAAGAAGTCATGAGGATATGCATAGTAGCGATGGTTGGTTCAATCCCATCCTCTTTCATTGCTGATAGTAAGTGCTCGGCTTTGGAATGGTTGCGGGCATTCCTATATATTTTCATCATCATGTGGTAGATAGATCTATTTAACCGATATCCCTTTGTTCTCATTTCTTCAAAAAGCAGGTCAGCTTGCTCCCAGAGTTTAGCTTTTCCAGATGCAGCAAGCAAGATTTTGTAGGATTCTAACTTGGGTGTCAAACCCCGTTTACCCATTTCATACAAGAGAGTAAAACCTTCTTCAGGCCTAAAGTTTCTACTGTACATGACTATAAGAGTATTATATGTATCCTCATCAGGCTCTAATCCAGCTTCCAGAATACTATGATATACTTCTATTGTCCTGTCAAAGTTTCCTGTCCCAGTATACATTAAAAGAAGGGTATTAAGTACCACGAGATCTGGTTTGAATCCTGCTCCCTCCATCTCTGCAACCATCAATTCGACATCTCTGAATCGTTTATTATGGCAGAGCAAGGAGATCATAATTCTGTAGAGGTGCATATTTGGCAAGTATCCTGCTGCCTTCATCCCATTATATATTTTCATTACCTCGAATACATCCCCAGCTTTTGCAAAAGCTTCAAGCATAAGGAGTACTGTGCTTTTGCTGATCTTGATGTCTAAATCTTGAAGCTCCTGAACAACCACATACAACTCATCCAGCCTGCCATCAACAATCAATGCTCTCATCATTCCATTAACTGATTCAACAGTTGGTAGAGGACCCTTTTTAATCATAATGTCAAAGATTGCCCTTGCATGCTCATAAAGGCCACTCTCAGCATATGCATGTATTAAAGCATTCCAAATCCTTCTATCAACACCAGACTCCTGCTTCAATCCTTTCACAAAATTTTCTGCCTGCTGCCAGAGTTTTAACTTACCATACGCTTCAATCATTGCTACTCTGCATGAAAGAATGTTCAAGGAAATATCAGATCGCGCAGCATCATCCATCAATTGATAAGCCGTTTCTGGGAAACCCAATCTGCAGCATGTGTAAATTATACTCTGGTATATCTTTTGGGAAGGAACTATGCCAAGAAACTGCATATCGCAGAACACTTGACAAGCTTCGGGAAATAACTCAGCCTCCTCAAGGTAAGTAATCAAGTACTCATACAAGTCGCAGTCTTGACCAAAGGATCCACGTTTTAACATTTGTTTTCTACTGTACTCCTGAATGGCATCAACAATCTTCCCATTTTTGCACAAAAGCATGATCGAGCATTCAGATATTAAGTTGTGGGAGTTGGGAACATGCTGCCGGATCCATTCAAGCAAAGAGAGACCTTTTTCATGCTTACCCATTTTTTCATATGCGTCTAAAATGGACAGTAGGCTCTTACCGTCAGGCTCATATCCTTGGAGGCATGCCCTCTTTAACAGACTAGCACCCTGAGAAATGCATTCAGCCTTGATGAGTATACTGGATATTACTAGTGGATTCATTTCAAAAACGGCCTCCATGTCTTGGATAACTCCTTCAATCTCATCGTGTTCATTTCCCTTTGCGAGTGCAGCAAGCAAGACCTGATATAAACCATCATCTGGCTTATATCCATCCTTGATCATAGCCCGGTACAGAACCATCAGCTTTCTAGTCTCATCAGACCTTGCAAAAACATCTAACATAACCAAATAGGCTAAACGATCAGGTTTGACACCTGACTCAACCATACGATCAAATGTACGCTCCGCATCATCCTGCCTCCCACTTTTGGCGTATGCACATATCAAAGCACTGAAAGTTACCAAAGTTGGCTTTAATCCTGCATCAGCCATCTCCTCCAGCACCTTCCCTGCCTCAGAAATCCTATCCATCTTCCCTAAAGAATCAACCAAAACAGTATAGGTCACAGCATCTGGAGTGCAGCCTATAGCCCTCATCTCATCATACAACCCAAGCGCCAAGTCAAGCCTGCCCATCTTTCCATACATATGAATCATGGTATTATAAGTAATCCCATCCTTCCTGAAACCAGCCTTAACCAATTCCTCACACACACGCTCCACCCTCTCCACATCGCCTTCCTTCGCGAAAGCATAAAGGAGCGAGTTGTATGTGACTGCATCCGGCTGAAAACCCTTCTCAACCAGCTCCTTAAACATCAGCTCAGCCTCCTGTGCCTTCCCGCACCGGCCATGCACGGAGACCATGGCATTGTACGTCCACAAATCTGGCCGACACTCTGAAGCTATCATCTCCTCAAACACCGCCACTGCATCATCCAAATTAGAACCTTGTGAGCAAGCACTGATGAGGGTGTTGTAAGTGATAGCATCCGGTCTCAGCCCAGCTTGCCGGACTTCATGTAGGAGCTCAAGAGCGACACCAGCGGCCAAACACCCAGACTTGGCCCTGGCATTGATAAGGGTATTGAAGCTAACGAGGTCAGGCTCGATGTCCTGGTCACGCATTGCGTCAAGCAGCTGGCGCGCGTCGTCGAAGCGGCCAGAACGAGCGTAGACGCCCATCATGGCATTGAACACCTGCACGGTGGCACCCTCGCGGGCGAACCGGAGGAAGACATCCTCCGCGAGCGCGTCCTGGCGGGCGCGCCCGAGGACGCCGAGGACGACGGCGACGACGCGGGGGCCCGGGGCACGCCCGCCGCCGCTCGCGAC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0332400.1 | 6 | 5024582 | A | G |
| Osa06LNT0332400.1 | 6 | 5024427 | T | G |
| Osa06LNT0332400.1 | 6 | 5025792 | A | G |
| Osa06LNT0332400.1 | 6 | 5026145 | T | C |
| Osa06LNT0332400.1 | 6 | 5026379 | A | T |
| Osa06LNT0332400.1 | 6 | 5026585 | A | T |
| Osa06LNT0332400.1 | 6 | 5026729 | G | C |
| Osa06LNT0332400.1 | 6 | 5025633 | G | T |
| Osa06LNT0332400.1 | 6 | 5026686 | G | C |
| Osa06LNT0332400.1 | 6 | 5027414 | A | G |
| Osa06LNT0332400.1 | 6 | 5027996 | T | C |
| Osa06LNT0332400.1 | 6 | 5028975 | C | T |
| Osa06LNT0332400.1 | 6 | 5030171 | T | C |
| Osa06LNT0332400.1 | 6 | 5030553 | T | A |
| Osa06LNT0332400.1 | 6 | 5032149 | A | G |
| Osa06LNT0332400.1 | 6 | 5034084 | A | C |
| Osa06LNT0332400.1 | 6 | 5034114 | T | C |
| Osa06LNT0332400.1 | 6 | 5034234 | T | G |
| Osa06LNT0332400.1 | 6 | 5034326 | T | C |
| Osa06LNT0332400.1 | 6 | 5034362 | A | G |
| Osa06LNT0332400.1 | 6 | 5034506 | T | C |
| Osa06LNT0332400.1 | 6 | 5032130 | G | T |
| Osa06LNT0332400.1 | 6 | 5026815 | T | C |
| Osa06LNT0332400.1 | 6 | 5025577 | A | G |
| Osa06LNT0332400.1 | 6 | 5029517 | T | C |
| Osa06LNT0332400.1 | 6 | 5030723 | A | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0332400.1 | osa-miR5796 | Cleavage | 4.0 | 10.968 | 1 | 21 |
| Osa06LNT0332400.1 | osa-miR5179 | Cleavage | 5.0 | 10.314 | 1 | 21 |
| Osa06LNT0332400.1 | osa-miR5837.2 | Cleavage | 3.5 | 9.654 | 1 | 21 |
| Osa06LNT0332400.1 | osa-miR159a.1 | Cleavage | 4.5 | 19.382 | 1 | 21 |
| Osa06LNT0332400.1 | osa-miR159b | Cleavage | 4.5 | 19.382 | 1 | 21 |
| Osa06LNT0332400.1 | osa-miR159c | Cleavage | 5.0 | 19.382 | 1 | 21 |
| Osa06LNT0332400.1 | osa-miR159d | Cleavage | 5.0 | 19.382 | 1 | 21 |
| Osa06LNT0332400.1 | osa-miR159e | Cleavage | 5.0 | 19.382 | 1 | 21 |
| Osa06LNT0332400.1 | osa-miR159f | Cleavage | 4.0 | 19.382 | 1 | 21 |
| Osa06LNT0332400.1 | osa-miR319a-3p.2-3p | Cleavage | 4.5 | 19.867 | 1 | 20 |
| Osa06LNT0332400.1 | osa-miR319b | Cleavage | 4.5 | 19.867 | 1 | 20 |
| Osa06LNT0332400.1 | osa-miR160f-3p | Cleavage | 5.0 | 12.997 | 1 | 21 |
| Osa06LNT0332400.1 | osa-miR167d-3p | Cleavage | 5.0 | 8.549 | 1 | 22 |
| Osa06LNT0332400.1 | osa-miR172a | Cleavage | 4.5 | 10.203 | 1 | 21 |
| Osa06LNT0332400.1 | osa-miR172b | Cleavage | 4.5 | 10.203 | 1 | 21 |
| Osa06LNT0332400.1 | osa-miR172c | Cleavage | 3.5 | 10.203 | 1 | 21 |
| Osa06LNT0332400.1 | osa-miR172d-3p | Cleavage | 4.5 | 10.203 | 1 | 21 |
| Osa06LNT0332400.1 | osa-miR444d.3 | Cleavage | 4.5 | 16.404 | 1 | 21 |
| Osa06LNT0332400.1 | osa-miR1436 | Cleavage | 5.0 | 10.731 | 1 | 21 |
| Osa06LNT0332400.1 | osa-miR2868 | Cleavage | 4.5 | 12.736 | 1 | 20 |
| Osa06LNT0332400.1 | osa-miR2275c | Cleavage | 3.0 | 5.712 | 1 | 23 |
| Osa06LNT0332400.1 | osa-miR2875 | Cleavage | 4.0 | 13.656 | 1 | 24 |
| Osa06LNT0332400.1 | osa-miR5525 | Cleavage | 4.0 | 14.51 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0332400.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0332400.1 | 6 | qRCRJ-6 | Physiological trait | Source activity | RM217 | RM402 |
| Osa06LNT0332400.1 | 6 | nan | Morphological trait | Seed | RG138 | RZ398 |
| Osa06LNT0332400.1 | 6 | nan | Morphological trait | Panicle/flower | RG138 | RZ398 |
| Osa06LNT0332400.1 | 6 | nan | Physiological trait | Source activity | RG138 | RZ398 |
| Osa06LNT0332400.1 | 6 | qASV6-1 | Physiological trait | Eating quality | RM111 | RM314 |
| Osa06LNT0332400.1 | 6 | nan | Morphological trait | Panicle/flower | RG138 | RZ398 |
| Osa06LNT0332400.1 | 6 | nan | Physiological trait | Source activity | RG138 | RZ398 |
| Osa06LNT0332400.1 | 6 | nan | Morphological trait | Seed | RG138 | RZ398 |
| Osa06LNT0332400.1 | 6 | qLW-6 | Morphological trait | Seed | RM217 | RM111 |
| Osa06LNT0332400.1 | 6 | qSPTF6 | Physiological trait | Sterility | RM217 | RM111 |
| Osa06LNT0332400.1 | 6 | alk6-1 | Physiological trait | Eating quality | RM190 | RM253 |
| Osa06LNT0332400.1 | 6 | hr6 | Physiological trait | Eating quality | RM190 | RM253 |
| Osa06LNT0332400.1 | 6 | qRCT6b | Resistance or Tolerance | Cold tolerance | R1954 | RM253 |
| Osa06LNT0332400.1 | 6 | rrsd6b | Resistance or Tolerance | Drought tolerance | RM253 | RM314 |
| Osa06LNT0332400.1 | 6 | QGt6b | Physiological trait | Eating quality | RM253 | RM314 |
| Osa06LNT0332400.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0332400.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0332400.1 | 6 | Xa7 | Resistance or Tolerance | Bacterial blight resistance | nan | nan |
| Osa06LNT0332400.1 | 6 | AsTol | Resistance or Tolerance | Other soil stress tolerance | RZ516 | RG213 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)