>Osa06LNT0332900.1

GGCGGAGGGGGGCGGGCAGGCGCGGGCGCGGGCGTAGGGGAGCGGGCAGGCGCGGGCGCGGGCGGAAGCAGGTGGGCGGGCGCGGGCGGTCAGCGGAGGCGGGAGGCAGGCGGAGGCGGATGCGGCGGTCGGCGGAGGCAGGCGGAGGCGGATGCGATGGGCAGATGTGGCGGTCAGATCCCGCCGCCTCCCAGACGCCAAGCGCCGCCGCGCCAGCCCACGGCCGCCATCCCCGCCGCCCTTGGCTGTCGATCCAGTCGCCGCCTGTCTCACTCGTTGTGCCGTCGTTGCCCACAGCCGCCGCCTTGGCCACCGGCCGCCTCCTGCTACGTCGGCTGTGATGTTGCACGCCACCCCACCGCCATACCAAGTGAAGAGGGAGGACAGGGACGTGCGACGGCGGCCGGCGAAGGTGGGATCGATCCAGATGGGGGCGGGAGAACTGGATGGCGTGAGGAGAGAGAAACGCCATTTGGCGGATGTCTATTTTTGGAGGATGTTTTGGAGTGTTTGCTGGAGCCTCTCTTTTTTTTTTGCTTCCATACGCCATTTCTCATATGGAGGGTGGGATAGAAGATCTGCTGGGATGCTCTAGGAGTACCTTTTTCCCATCCCATCTTCCTCATTTTTTACGCGCAC

Explanation	CPC Score
noncoding (weak)	-0.884366

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0332900.1	osa-miR528-3p	Cleavage	5.0	17.743	1	21
Osa06LNT0332900.1	osa-miR2924	Translation	4.5	22.192	1	21
Osa06LNT0332900.1	osa-miR2925	Translation	5.0	24.001	1	19

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0332900.1	6	qLDLJ-6-1,2,3	Physiological trait	Source activity	RM217	RM3
Osa06LNT0332900.1	6	qRCRJ-6	Physiological trait	Source activity	RM217	RM402
Osa06LNT0332900.1	6	nan	Morphological trait	Seed	RG138	RZ398
Osa06LNT0332900.1	6	nan	Morphological trait	Panicle/flower	RG138	RZ398
Osa06LNT0332900.1	6	nan	Physiological trait	Source activity	RG138	RZ398
Osa06LNT0332900.1	6	nan	Morphological trait	Panicle/flower	RG138	RZ398
Osa06LNT0332900.1	6	nan	Physiological trait	Source activity	RG138	RZ398
Osa06LNT0332900.1	6	nan	Morphological trait	Seed	RG138	RZ398
Osa06LNT0332900.1	6	alk6-1	Physiological trait	Eating quality	RM190	RM253
Osa06LNT0332900.1	6	hr6	Physiological trait	Eating quality	RM190	RM253
Osa06LNT0332900.1	6	qRCT6b	Resistance or Tolerance	Cold tolerance	R1954	RM253
Osa06LNT0332900.1	6	rrsd6b	Resistance or Tolerance	Drought tolerance	RM253	RM314
Osa06LNT0332900.1	6	Ps-4	Others	Others	nan	nan
Osa06LNT0332900.1	6	QGt6b	Physiological trait	Eating quality	RM253	RM314
Osa06LNT0332900.1	6	amy6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0332900.1	6	asv6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0332900.1	6	AsTol	Resistance or Tolerance	Other soil stress tolerance	RZ516	RG213

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus