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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0333000.1

AAGCATGTGTGTAGCAGTAAATCTGCACAAGAAAAAGATTCAAGAACAGTTTAGATTTCAGAAAAAGAAGTGATCGATCGATTGATTGATTCTTGCACATGAGCATGGCGAGCAGTGGCGGCTACTACTCCTACTACAACGGCCGCCGCCGACCGCCGTGGCGCCGGCGGAGGCCTCATGTACCTCCTCGCGCAGCTGATGGGCATGGGCGACGGCGGCGGCTCGCCGTACGGCCGTTGGCACGGCGGCGGCGGCGGCGCGTCGTCGTCGCCGTGGGGCGTGGCGCTGGTGCTGGTGCTGGTGCTGTTCTTGGTGTCGTACCAGTCGTCGTTCCAGAGCTGGTGGTTCCCGCTGCTCAGCCGCCGATGAGAATTGCAAAAGCTCGTGCATGTAAAACCATGGTGAAAATATAGCAGAGGCTTCTTGGTTAATCAGAGCTAAGCTCGGTGACGATCGAGCTATATATAATTGAGCACAAGGGCGGAGCTAGAGCGAGATGGAGGGATGCCACTTGTTTAATTTACTCTGTTTTATATTAAGTTTAAGCTAATACGGGTATTTAAATTTGTATTGAGAGATGTGCACACATGATGAAAATAGGTTAGGTATAACTATATTTTTTCTTGACCGGGTTCCTGGGTACCCCCCTCAATACTCTAGCTCGAGCAGATGGCATTTGGGTGCCGTGTAATTATGCTTGTCCGATCTCCAATCATAGTAACTAAATCCAATTTA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.894031
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0333000.1 6 5409769 A G
Osa06LNT0333000.1 6 5409845 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0333000.1 6 alk6-1 Physiological trait Eating quality RM190 RM253
Osa06LNT0333000.1 6 hr6 Physiological trait Eating quality RM190 RM253
Osa06LNT0333000.1 6 qRCT6b Resistance or Tolerance Cold tolerance R1954 RM253
Osa06LNT0333000.1 6 rrsd6b Resistance or Tolerance Drought tolerance RM253 RM314
Osa06LNT0333000.1 6 Ps-4 Others Others nan nan
Osa06LNT0333000.1 6 QGt6b Physiological trait Eating quality RM253 RM314
Osa06LNT0333000.1 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0333000.1 6 asv6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0333000.1 6 AsTol Resistance or Tolerance Other soil stress tolerance RZ516 RG213
Osa06LNT0333000.1 6 qRCRJ-6 Physiological trait Source activity RM217 RM402
Osa06LNT0333000.1 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
Osa06LNT0333000.1 6 nan Morphological trait Seed RG138 RZ398
Osa06LNT0333000.1 6 nan Morphological trait Panicle/flower RG138 RZ398
Osa06LNT0333000.1 6 nan Physiological trait Source activity RG138 RZ398
Osa06LNT0333000.1 6 nan Morphological trait Panicle/flower RG138 RZ398
Osa06LNT0333000.1 6 nan Physiological trait Source activity RG138 RZ398
Osa06LNT0333000.1 6 nan Morphological trait Seed RG138 RZ398
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus