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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0333500.1

CCGCAGTGATCGATGAAACGAGAGTAAAAATAGAGAGTGGAATCTCCGAGACCAAAATCAAGTCAACACAAAAGATGTGCAAAAACACAAACATACACAGCACAGCGCGCAATCTCACACAGTTACGTACGTACATCGATCCTGATCACGCACACTTGTCGATCACAGTATGAGAGAGAGGGAGGTTAATTAATTCAGTAGTAGGAGGCGCCGAGCTCGGCGATCTTGACGTTGAGGTGCCTCTGCGCGAAGGCGAAGAGCGTGGCGACCTCGTCGTCGCCGGCGACGGCGCCGTCGCGGTTGGCGTCGGCGGCGCGCACCCCGGCGCGCGCCTTCCACCACGCGAACCACAGGTTGAGGCTCCGCAGCGCGCGCTGCAGCTCGTCCCGGCTGATCCTCCCGTCGCCGTCCGCGTCGAACTGCCCCAGCCACGCCCTGAACTCCTCCACCGTCACCTCCCCTTGCGGCAGCGCCCTGTACCTCCTGAACGCCATCTTCGCTAGCTAGCTTAGCTGATTCGATCACTCGATCTGCTGATCAGTTGCTCTACTTAGATCGATCTCTTCAGCTAGCTAGCTACTATCTCAGTGTGTAGCTCGATCTGTCTGGGTGAGAGGCAAGTGTGAGCCAGCGTCGAACAATATATATAGGATCAGGGAGAGCTTGGCTTTCTTGATTTCTTCTATTGAGTTTTACGGCGCAACTATTTACCGCACGTTTCCCACGCACGCGCGTTTGGCAGGACGGTGGTGATGCATTTTTTTTATTATTT

Coding Potentia
Explanation CPC Score
noncoding -1.0031
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0333500.1 osa-miR7694-5p Cleavage 5.0 22.446 1 24
Osa06LNT0333500.1 osa-miR444a-3p.1 Cleavage 5.0 23.504 1 21
Osa06LNT0333500.1 osa-miR444d.1 Cleavage 5.0 23.504 1 21
Osa06LNT0333500.1 osa-miR2926 Translation 4.0 22.127 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0333500.1 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
Osa06LNT0333500.1 6 qRCRJ-6 Physiological trait Source activity RM217 RM402
Osa06LNT0333500.1 6 nan Morphological trait Seed RG138 RZ398
Osa06LNT0333500.1 6 nan Morphological trait Panicle/flower RG138 RZ398
Osa06LNT0333500.1 6 nan Physiological trait Source activity RG138 RZ398
Osa06LNT0333500.1 6 nan Morphological trait Panicle/flower RG138 RZ398
Osa06LNT0333500.1 6 nan Physiological trait Source activity RG138 RZ398
Osa06LNT0333500.1 6 nan Morphological trait Seed RG138 RZ398
Osa06LNT0333500.1 6 nan Physiological trait Eating quality RM253 RM162
Osa06LNT0333500.1 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0333500.1 6 asv6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0333500.1 6 AsTol Resistance or Tolerance Other soil stress tolerance RZ516 RG213
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus