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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0334000.1

CTCATTAATCTCGAATCAACAGCTACAAACTTACAACAAAAAAATGTATTCATGCTTGTCCGTATCACATGATAAGTGTTACATTATTAATCCAAATAATAGGCTAAAATTGGATTATTTAGGTGACAATTAAGCATAAGTAGTTCTTGACTCCTCATCAATCTCCTCAAGAAAAGGGTAATCTGTATAGCCAACAACGGGATCCTGTGTATAAAAGGTAGACCTGTCATACCTGTTCAATGGTGCGTCAAGCTCAAACCTCCTCGGCAAGTCAGGGTTAGCCAAGAAGAGCCTCCCATAGGCGACGAGATCGGCATAGCCATCAGCCACCACCTTGTTCCCTTCCTCCCGGTCATACCCGCCAGCAGCGATGAAAGTGCCATTGAACTGCTTCCTGAATGGTAGGAGGCCATGGGCGATCTTCCTTCGTCCTTCGATTATGGCCATTCTTGGCTCCACCATGTGGCAGTAGAGAAACCCTGGGTGCTTGTTGAGTTGCTGCACCATGTATGAGCCGAGAGCCACCGGGTCGGAGTCGAAGCAGTCCATGAAGTCGACGAACGGCGATAATCTGATTCCGACACGGTGAGCTCCCACCTCGGCGACGACGGCGTCGATCACCTCGACGGCGAAGCGGCACCGGTTCTCGAGGCTGCCACCGTACTCGTCGGTGCGGTCGTTGGCGCTGTCCTTCATGAACTGCTCCAGGAGGTAGCCGTGCGCGCCATGAATCTCCACGCCGTCGAACCCCGCCTCGATGGCGTTCCGCGCGGCTCGCCTGAAGTCGTCGATGATCTGAGGGATCTCATCCGTCCGGAGCCGCCGGGGCTTGGAGTACACCATGCCTGAATCGTCCGGTGTGATCTGCTTGTCGGTGCTTGAGATCGGCGCCTGTCCATTCGGCTGGAAATCTGTGGTGGAGACCCTGCCGACGTGCCATATCTGCAGGAAGAAGAGGGCGCCCTTGCGGTGGACGGCGTCGACGATGGGCTTCCACGCCTCGATCTGCTGCTGCGTGTAGATGCCGGGGGTCTCCGGGTAGCCCTGCGCGGTGGGGGAGATGTCGGTGGCCTCCGCGATGAGGAGGCCGCCCCTGGTCGCCCGCTGCGAGTAGTACACCGCCGCGTGCGGCTGCGGCACGTTGCCGTAGGAGCGGCACCGCGTGAGCGGCGCGAGCACCACACGGTGGGAGAGCTCCAGCTGCCCCATCTTGTACGGCGTCAGCAGCGGGATCGCCGCCGCAGCTGCCACTTTCGCCGGTGCGTGCACCATCTTTGGCTTAGGAGTAGCTTTGGTTCTTCTCGATCGAAATTGCTCTGCTTCTCTCTCTGTTTCTTGCTGCTGCTGCTCTGCTCTGCTCTGTTCTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.825673
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0334000.1 6 5918977 A G
Osa06LNT0334000.1 6 5919559 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0334000.1 osa-miR812t Translation 4.5 11.561 1 24
Osa06LNT0334000.1 osa-miR812u Translation 4.5 11.561 1 24
Osa06LNT0334000.1 osa-miR5818 Cleavage 5.0 17.838 1 21
Osa06LNT0334000.1 osa-miR397a Translation 5.0 23.685 1 21
Osa06LNT0334000.1 osa-miR415 Cleavage 4.0 14.003 1 21
Osa06LNT0334000.1 osa-miR415 Translation 3.5 8.1 1 21
Osa06LNT0334000.1 osa-miR812n-3p Translation 4.5 11.561 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0334000.1 6 nan Physiological trait Eating quality RM253 RM162
Osa06LNT0334000.1 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0334000.1 6 asv6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0334000.1 6 AsTol Resistance or Tolerance Other soil stress tolerance RZ516 RG213
Osa06LNT0334000.1 6 qRCRJ-6 Physiological trait Source activity RM217 RM402
Osa06LNT0334000.1 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
Osa06LNT0334000.1 6 nan Morphological trait Seed RG138 RZ398
Osa06LNT0334000.1 6 nan Morphological trait Panicle/flower RG138 RZ398
Osa06LNT0334000.1 6 nan Physiological trait Source activity RG138 RZ398
Osa06LNT0334000.1 6 nan Morphological trait Panicle/flower RG138 RZ398
Osa06LNT0334000.1 6 nan Physiological trait Source activity RG138 RZ398
Osa06LNT0334000.1 6 nan Morphological trait Seed RG138 RZ398
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus