© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0334200.1
GCTTTGAACAAGCATTTATCAGCTACGGCTGCCTTAATATTATGAAACATCAAGCATCCTGAGTATGGCAATCAGAGAGGCAAAGTAACTCTCTCGACCAAAAAATAATGTTACAACATAGGCTTGTTCATTGTATAAACAAAAAAAAGGAAGTTACACCGAATGCCCTCAATTGGCATCCATATACAACATAGGGAGTAATATATAAACTCTAAGAATGAACTAAAACTATGATCTGACATCCTTGAAAACACCACCTTTCTCCATCTCCGCAACGATGTCTTTCAAGGCTGGTACTTTGTTAGCTAGAGTTCTGTACAGTCTAGAATATCTGGCTCTTGTACCATCGGCGGTTCGTGCCAGGGCAAGCAAGCTGATTGCTTCTGGTAATTCCTCAAAGACACCTTTTATTTCCTCAAAGCTCATTTCTGCAAGAACTGATGGCTTTGGAACAACTCGGATTATCTCATCACCTTTAGGTTCCTGAATTTTTTGGTCAGCCTTAATGACCAGTTCACAGCTCGAATTTGCTCCACATTTTATGATGAATGGGGCTGATGTTCCAGTGTTGAACTGTAGTACGTTCCACTGTGAAACTTCGCTCTCGCCCAGTGTGTTTGAATTCAAATCTGTGGCAGGTTCATCGGGATCCTCTTGCAGTGACTCTACAACTTTCCTTGCTTCCATGATCTGCTTCTGAGCACAAGGATGATCAACGTCAAGAAGAGAAGGCATTTGTGCCAATAGATCATCCAATGATTCTAGCAACGCTTTCTTTTTTGATTTTCTCAATGGCCTTGCTGAACTTTGTCTCATTACTTCCTTCACTTGTTTTATGATGTTGTCTAAAGATATGAGAGATGCCAATCGTGCATCTTCAGCAGCAGTTGGAGGATTTCGGATAGGTGAACCACCTTCTTCTTTGGTTAACAAGACAGTATCCGTTCGCATTTGTTGCATGATCTTTCTTCTTTTGTGATCGACTGACTCTAGAGCAGATCGTAGCTTACTGACATGAGCGGGATCATCAGCCACCTCTGTAGCCAATGTGCCAGCAATGTCCTTCAAGTGATGTAGTTGGGATGTGTAAACTCGTTTTGTGTACTCGGATAACAGTTGACCCAAAGCATCAGTTGAGGGGGGTCTCGCAGTACCAAGGCCAGCCATCCATCCATCCATAATAGCAGTTGATAATAATTCAAGTTGCCCGGAAGCTCCAGCAACATCTCCACCAGTTACAGATAAAAACTCAAAGTTCTCTGCAAGCCATGCTCGGATCTGGCGTTGCAATTCACCAGCTGGCGTATGAACAAAGAGAGCAGCTAAAGCCTTGTTTCCAATTGCAAAAGCCTTGGCTTCCTCGGTAATTTCCCGAAGCTTTCCTCCAGTGACGTGTTGTCTCCATGTCTCCTCCTCAATCCCACGAAGCTTCAAAACAATCGAGGAGAACTTTGATTTCCTTTCTGGTTTAATGTTAACTTTGAAACCATGCACATGCTCATCGATTAAGGAAGTTCGTGAACCATGATCGTGGTGGTGATGAACAGGTGACCTGCCAGGACTACTTCCCCTGCTAGAACTTCTGCTCCGACTAGTATGTGATTTCTCCAGAAAACGCTCAACTGGAGAAACCTTGATTGACTGAAGTTCCGGAGACCTAGCAAGCAAAGATCTAATGTACAATATCTTAACCCTTGAAACTAGCATTGTATCCATAACTTTTCTTGGTTCCATTTTGCGGATGAATGAAAAGACAGCGTCTCGGATCTCAGCAAGTATCTCATGCTCCCTAGCGGCACCTGCTTTGATAACCGCAGCCAACACCAGCATCAAAAGCTTATTTGCACCATCTGCTATCGCGGCAACTCCCTCAAACTGATTAGGATCAAAATCCATTAGTGCAGACGTAAGATATTCCCCAGCAGGTGTAGTTTTTGTTAACTCATTGCTTGATTTCACAATAGCTCCACTGTTTCCAGCTTTGTCCTGTGACACTGGTAAGGGGAATACATCTGATGACTGACTTTTGGTGCTGTCACTCCTTCCTATATCTCTTCCCTGAGCATTAGTTTGTTTGTTTGAAGGACTTGGAGCCTGTGGAGAGCTTCCTAATCCTGACTTCTCTGTAAGTCTGTCAAAGAGTTTCTCATTCTCCTCATGCAATTTCTCAATAAGGGCATCCCTCTTTGCTAATTCCTCTTCTAGCCTTTTGGTCACTGAGGATGAATCAGCAGTTGACTCCATCATCTTTGGGGTAGATATAACTGAAGCAGATTCAGACCCAATAGTTGATCTAGCATCACTTGAATTTAGGGCTTCATTAAGTTGAGACTCGATGGACTTAAGTTTTGCCTGTAGTGACTGAATTGTTAAATCGCGCTCATGCATCTTTATTTTCTGCTCCTGTTCAACTTCCAGAAGACGAGAAATCTGATCCCTTAGCTGGTTGTTCTGTTCTTTCTCAATCCTGTGCTTCTCAGCGAGCATTAAATTTTCAGACTTCAGATCAGCTTGAAGTGTAGAAGAAACTCTCCAGGCCTTCTGTACTTCGTTGAAGAGCAGCGTACATTGGTCGTTAGCCTCTTTAAGAGAGAGCTTTAATCCCAAAACTTCTTGGCGCAGATCTAGAACCTCCTTCTCCTTGTCATGCAATTCTTTGCGTGAATCATTTGCCACATCTTTCCATTTCTTGATTGTATCGCGGTTTCCAAGGCTCAGTTCAGCATTTTTTGCTCTAGCAGAAAAGCTGAGTGTAGACAAGGTTCTAGACAAATTTGAAGCACTTGGACTTACATGCACGATCAGTAAGGTCTTTGAGCTACTTCCAAGAGAATCAGCTAAGATTTGTGTAATTCTTGAATTCCCGGATAGAACAGGTTCCTTCTTCGCACTTAATGAGGCTAAAGCATCACCCAACGCAGAAAGCGATTTTGAGACATGCAAGAAATCTGTTACATTGTCTCTATTAGCATCTTCTTCAAGGAGGCATTCACTAGCTGGCAAATCAACTAAAGAAAGCTTGCTGTACAGGTGTTCTCCTGTTACATAGTTTCTGTAGTGTATGTGGATAGTAACAATCAAGTGTGATACCATGACCTTCAAAGAATTCGCGGATCTATTTTCAAGTGCAGCCTTTAGCGAATTAGAAAATTCCAGGGGATTTTCAACCTTCTCCTGCACAAGTTCCACAAAGGATTCTTGCACACCCATGCGAACTTTTGGGACGGGGCTTATAGAGTCTGATAGCAAATCCCGAACCTGATCGTTGTAGAGCTCGCAGGCGGTAATATAGAAATTAAAGTGTGAGGTAGAAGTAGTATCTGAATTTGAAAGATCAAACAATTCCTCAAAGCTCCGCAGATATAAACCACGATCATGGCTAGATCCTTCCAGGGTATGTGTTTTTCCAGAGCGGCTTTGACCATAAGCAAATATGGCAACATTGTAACCATCCAAGGCCGACTGCACAAGGGGTTGAACATCATGGAAAAGTTCACCTTGCCCAATGTGGGGTCCATATACCCTGTCGAACTCATAATCCTTCTTAGGATTGGTTAAAGATTCATCTCCAGTGTTTACACGGATAGTAAAATCATCTGGAAACTCTACTACTGATGAACCTTCATCTTCAAATAGGGGTCTGCTACGGCAAAATACTTTGACATTGCCTTTCAAGGTCAATAAGTCATTGAAAAGCCTTTTCTTCTCATGAATCAAAGGAGTGATTCTAGCTTCAGTTTCAAGTGCAGCTTGATCTAATTTTCGAGTTCTATCAGCAAGAAATCCAAGATACCGAGTGACGCGGCCCAGCTTTGCATTGGAATACTCAAGAAGGTCACTAGCTTCTTGTCTAAGTTCCAAGCAGTCCTCTCTGGCAAGCTGGACGCTGTCCGCGAGCTGGTCGAGGCGGTCGGCGACGGGAACCACCGCCCCGTCGGCCCCTGCGGCGCGGGCCACCATGGCGGTAGGCGGCGCCCTCGGCATGGCGGTCGGCGGCGCCAGCGGCATCCCCGCCGCCGCCCCCACCACCGGCTGCGGCGGCTCGAACCCGGGGACG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0334200.1 | 6 | 5986412 | T | G |
| Osa06LNT0334200.1 | 6 | 5989620 | A | T |
| Osa06LNT0334200.1 | 6 | 5983029 | A | G |
| Osa06LNT0334200.1 | 6 | 5983149 | G | A |
| Osa06LNT0334200.1 | 6 | 5983227 | A | G |
| Osa06LNT0334200.1 | 6 | 5983802 | A | T |
| Osa06LNT0334200.1 | 6 | 5984243 | T | C |
| Osa06LNT0334200.1 | 6 | 5984635 | A | C |
| Osa06LNT0334200.1 | 6 | 5985119 | G | A |
| Osa06LNT0334200.1 | 6 | 5985174 | C | T |
| Osa06LNT0334200.1 | 6 | 5985408 | A | G |
| Osa06LNT0334200.1 | 6 | 5986088 | T | G |
| Osa06LNT0334200.1 | 6 | 5986872 | A | G |
| Osa06LNT0334200.1 | 6 | 5987185 | G | A |
| Osa06LNT0334200.1 | 6 | 5987491 | C | T |
| Osa06LNT0334200.1 | 6 | 5988040 | C | T |
| Osa06LNT0334200.1 | 6 | 5988591 | T | A |
| Osa06LNT0334200.1 | 6 | 5989333 | C | A |
| Osa06LNT0334200.1 | 6 | 5990360 | G | A |
| Osa06LNT0334200.1 | 6 | 5990760 | A | G |
| Osa06LNT0334200.1 | 6 | 5991132 | T | C |
| Osa06LNT0334200.1 | 6 | 5991352 | A | T |
| Osa06LNT0334200.1 | 6 | 5991822 | G | T |
| Osa06LNT0334200.1 | 6 | 5991940 | A | G |
| Osa06LNT0334200.1 | 6 | 5992703 | A | T |
| Osa06LNT0334200.1 | 6 | 5992792 | T | G |
| Osa06LNT0334200.1 | 6 | 5992799 | C | T |
| Osa06LNT0334200.1 | 6 | 5993769 | A | C |
| Osa06LNT0334200.1 | 6 | 5994087 | T | C |
| Osa06LNT0334200.1 | 6 | 5994826 | C | A |
| Osa06LNT0334200.1 | 6 | 5994876 | A | G |
| Osa06LNT0334200.1 | 6 | 5994895 | T | C |
| Osa06LNT0334200.1 | 6 | 5994919 | T | A |
| Osa06LNT0334200.1 | 6 | 5994940 | G | A |
| Osa06LNT0334200.1 | 6 | 5996291 | C | G |
| Osa06LNT0334200.1 | 6 | 5996927 | C | T |
| Osa06LNT0334200.1 | 6 | 5997623 | T | C |
| Osa06LNT0334200.1 | 6 | 5997985 | G | T |
| Osa06LNT0334200.1 | 6 | 5998068 | T | A |
| Osa06LNT0334200.1 | 6 | 5998571 | A | G |
| Osa06LNT0334200.1 | 6 | 5987427 | A | G |
| Osa06LNT0334200.1 | 6 | 5988201 | A | G |
| Osa06LNT0334200.1 | 6 | 5997887 | A | G |
| Osa06LNT0334200.1 | 6 | 5998232 | G | A |
| Osa06LNT0334200.1 | 6 | 5991870 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0334200.1 | osa-miR5542 | Translation | 5.0 | 15.252 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR5542 | Translation | 4.5 | 20.506 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR5794 | Translation | 4.0 | 17.754 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR5794 | Translation | 4.5 | 18.278 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR812v | Cleavage | 4.0 | 13.479 | 1 | 24 |
| Osa06LNT0334200.1 | osa-miR5807 | Cleavage | 3.0 | 20.821 | 1 | 24 |
| Osa06LNT0334200.1 | osa-miR5828 | Cleavage | 5.0 | 13.712 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR6248 | Cleavage | 3.0 | 17.886 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR7694-3p | Translation | 5.0 | 13.52 | 1 | 22 |
| Osa06LNT0334200.1 | osa-miR159a.1 | Translation | 4.5 | 21.781 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR159b | Translation | 4.5 | 21.781 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR160f-3p | Cleavage | 5.0 | 12.51 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR167h-3p | Translation | 4.5 | 13.701 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR1428a-3p | Translation | 4.0 | 11.157 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR1853-3p | Translation | 4.0 | 13.857 | 1 | 22 |
| Osa06LNT0334200.1 | osa-miR827 | Translation | 5.0 | 14.867 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR2871a-3p | Cleavage | 4.0 | 16.821 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR2871b | Cleavage | 4.0 | 16.821 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR5494 | Translation | 5.0 | 14.329 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR5498 | Translation | 5.0 | 19.452 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR5499 | Translation | 5.0 | 16.79 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR5499 | Translation | 5.0 | 13.934 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR5511 | Cleavage | 4.5 | 21.268 | 1 | 21 |
| Osa06LNT0334200.1 | osa-miR5523 | Cleavage | 4.5 | 8.112 | 1 | 22 |
| Osa06LNT0334200.1 | osa-miR6248 | Translation | 4.5 | 18.093 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0334200.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0334200.1 | 6 | qRCRJ-6 | Physiological trait | Source activity | RM217 | RM402 |
| Osa06LNT0334200.1 | 6 | nan | Morphological trait | Seed | RG138 | RZ398 |
| Osa06LNT0334200.1 | 6 | nan | Morphological trait | Panicle/flower | RG138 | RZ398 |
| Osa06LNT0334200.1 | 6 | nan | Physiological trait | Source activity | RG138 | RZ398 |
| Osa06LNT0334200.1 | 6 | nan | Morphological trait | Panicle/flower | RG138 | RZ398 |
| Osa06LNT0334200.1 | 6 | nan | Physiological trait | Source activity | RG138 | RZ398 |
| Osa06LNT0334200.1 | 6 | nan | Morphological trait | Seed | RG138 | RZ398 |
| Osa06LNT0334200.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0334200.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0334200.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0334200.1 | 6 | AsTol | Resistance or Tolerance | Other soil stress tolerance | RZ516 | RG213 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)