\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0334500.1

GAGCACAAGCAGATAATGCGATATAATAGCTCAGTAACTCGGAGCACTAGTACTTTTTTTTTACCATCATCAGCAAAGATTTGCACTGTTGTTACTGTTTTCACCACCATCAGAAACTCCACAGATGAACAAAACATCAGAAACCCCCACAGGATGAACAAAACGCAAGCAGGGATCAGAACACGAGTAGCGGACACCATCACAAAAAGGCCTCTCGATCTAGTCTCAAACTTATTCCTACTCTAGATAGCCTCGCTCTCGATCTAGTCTCAAACTTACTCCTACTCTAGATAGCCTCGCTCTCCATTAGCACTAGAGCTTACTTGGTCGGACCTCCTACTCGACATTGACCTGGAAGACGTCCTTGCGCTCCTCCTCCTTGAGCTTGGGCACGGCCACCCTGAGCACGCCGTTCTTCATCTCCGCCTTGATCTTGTCCATTTTGAACGCGTCGGCGGGGAGCTCGATGCGGCGGGTGTAGCGCGGCGGCGCGGCGTCGGCGTCGTCCTCCGGGTCCTTCTCCCCCTCGCCCTTGATCACCAGGCTGTTCTGCTCCGCCCACACCTTCACGTGCTCCTTCCCCAGCCCGGGCATCGAGACCTTGAGGTGCACCGCGTCGTCGTCCTCCTTCGCCACCCACCACCCGCCGCGCCGTGCAGCCGCGGTTGCGAGGCCGTTGGTCCCCGGCGCCGCCGCCGTCGCCACCGCCGCGTCCTCCATCAGGGCCAGCAGTCGTCCCAGGCTCGTCGGCGCGCCGAACGGGTCGAGCACGTCGGAGGCGGAGAAGAAGAAGGGGACGGTGAGGCGGCGGCCGTCGTCGGTGGCGTCGTACTCGTCGCCGCTGTCGGTGCCGGACTCGTCGACGACGTCGTAGCGGCGGAGCGGCGCGCCCTCGGTGTTGTACAGGCGGCGGGAGGCGGCGTTGGTGGCGGTCGCGGCGGCGGGGGCGGTCACGGGCTTCCCGGAGGCGGCGGGAGCGGCGGCGACGGGCCTCCCGGTGGCGGCGGGCGGCGCGTCGGCGGCGAGGAGCTGCCTGAGGAGGGTGGCGAGCGGGCGGCCCTTGAGGGCGACGGTGGAAGCCATGGATGACTCTCTCTCTCTCTCTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.445468
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0334500.1 6 6152190 C A
Osa06LNT0334500.1 6 6152959 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0334500.1 osa-miR5507 Cleavage 5.0 16.72 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0334500.1 6 nan Physiological trait Eating quality RM253 RM162
Osa06LNT0334500.1 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0334500.1 6 asv6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0334500.1 6 AsTol Resistance or Tolerance Other soil stress tolerance RZ516 RG213
Osa06LNT0334500.1 6 tns6 Morphological trait Panicle/flower RG138 RG64
Osa06LNT0334500.1 6 qRCRJ-6 Physiological trait Source activity RM217 RM402
Osa06LNT0334500.1 6 sd6 Morphological trait Panicle/flower RG138 RG64
Osa06LNT0334500.1 6 sd6 Morphological trait Seed RG138 RG64
Osa06LNT0334500.1 6 tns6 Morphological trait Seed RG138 RG64
Osa06LNT0334500.1 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus