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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0030600.1

GTCGTCCCGGCAAGGGCGAATCCGCCGCAGGTGAAGGGGCGCACCGCCACCGCCACCGCCACCGCCACCGCCGGTCGCCCGCGGCCTCGTCGCGCTTGAACCAGGGGAGGCGATGGTGAGTAGCCGCGGCGGCGGCGGCGGCGGCTGGCCACTCGGGGGGCGCGTGGGCAAGCTTCCCGCCGCCTCACGGAGAGGCGATCGGAGGGCAACGCCGCGAACCGGCAAAACTAGATTGGGAGGCGAGTGAGATTCTGATGCTCTCTGTTGAGGACCCACAAGAAGGGAAGGATGCAGGTGGATAGCAGCTAAATATGCTGGAGAAGATGACATGATTTTTTTTAGAACAATGAGCAGATGACATGAATTGAGTACTTACAAAAATAAAAACTGATGTAAATGAAGGCTTAAAACAACTTAGCTAGTCTTGAAATATGTAGTAGCAGGGAAACAATCTACAGGAAATTTTGCCATGGCCTCCTCGAGTTCAATCTATCTGGGCTGCACCAACGAGATTGGTAGAATATGTGCCAAAGCATGGGTTGAACAAGGTTTGGAGCCCTTTCTGGACCAAAGAATAAGTATCTCCGGTTGGCTGGCAGGACCTCGGAAGATGGAATTGGATTTTGTTCTTTGGTCCTTACTGCTCATTGTACGTTTGGGCCTTTGAATCTCAGGATAAAAATTGTAGACCACATAGTGCTTGTTCTACAAGGCTGTGCAGTTTGTCCTCTTGTTAGCTGTTACTCTGCATTTGTAGCCTGCCTTGCAGTGAGAGGTTCTGTCTACGTACTGGTCCTGAAAACTGAAAATATGTTTTGCCCCTCGGTGCTGCCTTATGACAATAGGAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.978183
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0030600.1 1 27061529 T C
Osa01LNT0030600.1 1 27065182 C T
Osa01LNT0030600.1 1 27064482 C T
Osa01LNT0030600.1 1 27064416 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0030600.1 osa-miR1854-5p Translation 5.0 16.118 1 21
Osa01LNT0030600.1 osa-miR1861g Translation 5.0 22.751 1 22
Osa01LNT0030600.1 osa-miR2918 Cleavage 5.0 12.479 1 21
Osa01LNT0030600.1 osa-miR3981-5p Translation 5.0 22.665 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0030600.1 1 yld1.1 Physiological trait Source activity RM5 RG462
Osa01LNT0030600.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0030600.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0030600.1 1 QPh1b Resistance or Tolerance Submergency tolerance RZ527 RZ154
Osa01LNT0030600.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0030600.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0030600.1 1 nan Morphological trait Seed CDO118 CDO455
Osa01LNT0030600.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus