© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0335200.1
GACAAAATGGAAAGAATATGGGATTTATTTTGTTGTAACAGCATATTATCTGTTGTCTCGGGACAAAATTTCTTCTTCGGCTATTTACAGTTTGGTCAGGTTTCAACAGAGGGATGCATCAAAATTACAACAGGAGGACGGAGCACTTGTTCAAAAAGGCTCAGGAAAATTTGGTGTGATTAGGTGTTTCTCTATTGATACAGGGATCACATAACTCTGAAATAGGATATAGGTGAAAAGGAAAGGAGGCGGGCACATCAGAGAAAGAAGCGCCTATTGCTGGCTTCCTATGGCTAAAGTTGGAGCTCGCTAATGATGCAGATGATACAATGTGAGAACTAAAAATACTGACAGAACAATGTTAGCTGCCGAACCCAAATGGTGATTTACTCCTGCTTCCACCTTCCCCGTACTGCTCGTTCCATTTTCGTAACTCGTTCATGCTCGTGGCGTCAAAAGCGACGGATGGACTTACCTTTGCTTTTGCTTGCACAAAATCCTCCAACTTTAAGGGCCTCAAAGATATTTTTGTGCCACTAACGCCTCCCTTTTCTTCTTCTAGAAGCTCATGAACTGGTCTGTACGCAGCTGCGATGCATAGGTTCTTCAAGTCACTACCAGAGTAACCCTCAGTTGCATTGGCTAGTTCGTCAAATCTGAAATCAGATTCCAGGTTTTCTTTTGCAAGTAAAATCTTCAGAATTTTCATTCGATTCTGTGAGTCCGGAAGGTCAACGTATATCCGCCTAGGTAAACGCCGAATTACTGCATCATCTAGATCAAATGGACGGTTTGTTGCACCAAGAATAAGGATCCTTTGGTTCTCTTTGGATCTTAAACCATCCCAAGCTGCCATGAATTCATTCCGCATTCTTCTTGTTGCTTCGTGTTCAAATGCACCACCTCTTGCACCAAGTAAGCTATCAACCTCGTCCACAAATATGATAACAGGTGCTAGCCGACTAGCAAAGGAGAAAAGGGCCTTAGTGAGCTTCTCAGCGTCTCCAAACCACTTTGATGTAAGATTAGAACCAGTTATGCTGATAAAATTTGCTCCAGCTTCTGTTGCAAGTGCCTTTGCCAAAAGTGTTTTCCCTGTCCCTGGAGGTCCAAAAAGCAATATACCTTTGCAAGGCCTTAACAAGTTCCCATGAGAAAAAAGCTCTGGTCTCCTCATTGGAAGAGTAACAAGTTCATCCAGTGTCTTCTTAACATCCTCAAGAGCACCAATATCATCAAATTTTACTCCAATTTCATTGGGAGGTACAACTGCTGAAATGAAATTGCGCTCGAATTCATCTTTTGCCAAAATCTTAATTTTTTCAGAAGACTTCCTCGATGAAGCCTCCTGTGCCTTTAACCTTCCAATTGCTAGGTCCAGACTCTCACGGGGAATGATCAGCCTGTCACCCTTTATAGAGGGACACGTCACTGATGATAAATAGTGACTTCTAGCCCATCCAATGACCTTCTCTGCTCTTTGTTTTGTCAAAATAATGCCCTCCAATTTCACATGCAAAAGATCCTCACATGATAGCTCATGCTCTTCAAGCACCTTGTGCATTTCTACAAGGTTATGCCTTGAGATAATTATTTTTCTGTCCTCCTCAATCTGGTTATTGAAAACTCTCAGCTGTTCATCATCCTTTGGAAGAGGAATAAAGAATTTATTTCTGAAGAGCTTTGATATGTCATTTGACTTTGAAGGCTTCCGCGCTTTTAGCCCACCTACCAGCCGCTTCAAGGATGATGTCAGTGGAGATAGGCGAGCAAGATTGTGGAACACTAGCGTCTTCGGCTCTTTTTCCTTGGGCGCTGCCTCAGTTATATTTTGTCCACATATCAAAACTAAAGACCCAGTAAGCTGGTCAAACACTTCTTCTACCTTTTCAACAAACTCCCTGCGATTTGATCTTGGAACTGCCCTAGACAGCCACTGGGAACTATCAGGAAAGTAAACAATGGCTGGCTGTAGAGATGGCAGTACCTCACGAAGTGCTTCGATTGCGATGTGCCAATCTTCTGCCTGTATATCATGGTCAAGCTCAATATCCTGAGTGTCGACCCAACAAACTGCTGGTTTAGCAAGATGCTCTTTGCTAGCTTCATCTTTTTTATCATCAGACAGCTTGTCTTCAGAAGGATCAAATATAACAGCTGCTTGATCGCCATTGATCTCATACACCTCTCCACGCTGTCCATTTGATAATGTCCTGCCATTAATAGAAGTATAGGCATTTGTTCCTCCCTCTTGAGTAGGAATTTGCCCCAAATTGATCCTGTGATCTGCTTCAACAAGCACTGATGCTCCAACATACTTGACCCTATCTCCCTTTTGGAGCGGCCTTTTCCCATCTTCAGGAGACTCAGCAGTGTCAGAGGATTCTGATGTTGATGAACTTCCCTGGGCACTAGCAACTCTCTTTGCAAATTCCTCAAGAGTGCATGGAACAAGCTTCTTGAGGTCTTCCACGGATTTAATAGCATCATCATCATCGCTTTCACCTGATTTTTCTTCATCATCATCGCCTTCATCTTCCACCTCTGACACAGACCCTTCATCTTCAGATTCTGCATGATCATCTTCTTCCTCACTCTCTGAACAATCTTCACCAAAATCATATGGAGCTAGAACACTGCTGTCCAAAACCAACAGTGGCACGCGTAGCTCATGGGCAAGTGCTTTTACCAATCTCTCCCGGTAGAGCTCAGTTCCTGACAAGCTCTGGAGCAATATCCTCCCACCAGAGGACTGCAGCCGAGAACCATACTCCAGAGCGACATCTTTGTGGCGCAGGTGTGCCGCCACACAATCACTCAGCAGCTGCCTTGCGTCCTCATCGACGTAGTACGGGAAGCTGCGCCAGGAGAGGGTGGCCTTCTCCCATGGCACGACGCGGCGCAGGAACTGGTCGCGGAAGCGCTCCCGCTTGGTGAGGAATGGAGACTCCCGCCTCCTGCAGCCGGTGACGAACCGCTCGCCGCTCAGCCATTCCTTCTGGTCCCTCTCCCCGAGCCGCGCGTGCTCCTGCTCGCTGCTGCTGCTACTACTACCGCCTCCGCCGCTCCCCACAGCCGCCTCCACGCTGCCGACGCCGCCCTTGGAGCAGTAGAACCGGGACGACGGCCGCCGCCGCCCGTCGCCGAAAGGCAGGGGAGGCGGCCTCCGCGCCACCGCGCTCCCGCCAGGCTCTCCGAGCCCCACGACAAGCGCGCCTCCGGTCTCATGCGTGCGCAGGAGCTGCGGGCGCAGGAGGCCGCGCAGCCGCATCGCGCGATGCATCGCTGGAAGCCGCGTCGTCGTCGGGCGAGGCGAGGAGGAGGAGGGATCCGCGAGCGCGCTAGGCCTCCCTCTGGCGCATGCGGCGGTGGCAACAGGTGGACGGTGGATGGGCGCCGCGAGCGCCGGCGGCGCGACGGCGGGGAGAGGTGTCAGGGTGGCGGCGGCTGCGACGCCTCGGGAGGAGGAGTACGGCGGCGGCTGCACGGCTCGCCG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0335200.1 | 6 | 6514077 | C | A |
| Osa06LNT0335200.1 | 6 | 6504072 | G | A |
| Osa06LNT0335200.1 | 6 | 6504600 | A | G |
| Osa06LNT0335200.1 | 6 | 6504845 | C | A |
| Osa06LNT0335200.1 | 6 | 6505695 | C | G |
| Osa06LNT0335200.1 | 6 | 6505880 | G | A |
| Osa06LNT0335200.1 | 6 | 6506376 | T | C |
| Osa06LNT0335200.1 | 6 | 6506587 | T | C |
| Osa06LNT0335200.1 | 6 | 6506654 | T | C |
| Osa06LNT0335200.1 | 6 | 6506972 | T | G |
| Osa06LNT0335200.1 | 6 | 6507799 | C | G |
| Osa06LNT0335200.1 | 6 | 6507852 | T | C |
| Osa06LNT0335200.1 | 6 | 6508574 | A | G |
| Osa06LNT0335200.1 | 6 | 6508720 | A | T |
| Osa06LNT0335200.1 | 6 | 6509134 | T | G |
| Osa06LNT0335200.1 | 6 | 6509286 | A | G |
| Osa06LNT0335200.1 | 6 | 6509411 | G | A |
| Osa06LNT0335200.1 | 6 | 6509695 | G | C |
| Osa06LNT0335200.1 | 6 | 6510320 | G | A |
| Osa06LNT0335200.1 | 6 | 6510379 | G | C |
| Osa06LNT0335200.1 | 6 | 6511311 | A | C |
| Osa06LNT0335200.1 | 6 | 6511554 | G | A |
| Osa06LNT0335200.1 | 6 | 6511572 | T | A |
| Osa06LNT0335200.1 | 6 | 6511637 | T | C |
| Osa06LNT0335200.1 | 6 | 6512205 | A | C |
| Osa06LNT0335200.1 | 6 | 6512223 | G | T |
| Osa06LNT0335200.1 | 6 | 6512588 | A | G |
| Osa06LNT0335200.1 | 6 | 6514298 | C | T |
| Osa06LNT0335200.1 | 6 | 6511766 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0335200.1 | osa-miR5526 | Translation | 4.5 | 13.564 | 1 | 21 |
| Osa06LNT0335200.1 | osa-miR1437b-5p | Translation | 3.5 | 18.753 | 1 | 21 |
| Osa06LNT0335200.1 | osa-miR167a-5p | Translation | 4.5 | 17.885 | 1 | 21 |
| Osa06LNT0335200.1 | osa-miR167b | Translation | 4.5 | 17.885 | 1 | 21 |
| Osa06LNT0335200.1 | osa-miR167c-5p | Translation | 4.5 | 17.885 | 1 | 21 |
| Osa06LNT0335200.1 | osa-miR396a-5p | Cleavage | 4.5 | 18.678 | 1 | 21 |
| Osa06LNT0335200.1 | osa-miR396b-5p | Cleavage | 4.5 | 18.678 | 1 | 21 |
| Osa06LNT0335200.1 | osa-miR396c-5p | Cleavage | 4.5 | 18.678 | 1 | 21 |
| Osa06LNT0335200.1 | osa-miR169i-5p.2 | Cleavage | 4.5 | 14.737 | 1 | 22 |
| Osa06LNT0335200.1 | osa-miR415 | Translation | 5.0 | 6.586 | 1 | 21 |
| Osa06LNT0335200.1 | osa-miR443 | Translation | 4.5 | 13.068 | 1 | 22 |
| Osa06LNT0335200.1 | osa-miR1846a-5p | Cleavage | 4.0 | 15.677 | 1 | 21 |
| Osa06LNT0335200.1 | osa-miR1846b-5p | Cleavage | 4.0 | 15.677 | 1 | 21 |
| Osa06LNT0335200.1 | osa-miR1846c-5p | Cleavage | 4.0 | 15.677 | 1 | 21 |
| Osa06LNT0335200.1 | osa-miR1846e | Cleavage | 5.0 | 17.174 | 1 | 20 |
| Osa06LNT0335200.1 | osa-miR2097-5p | Translation | 5.0 | 16.251 | 1 | 22 |
| Osa06LNT0335200.1 | osa-miR2868 | Translation | 4.5 | 14.832 | 1 | 20 |
| Osa06LNT0335200.1 | osa-miR2870 | Cleavage | 4.0 | 14.025 | 1 | 21 |
| Osa06LNT0335200.1 | osa-miR2863b | Cleavage | 4.0 | 16.663 | 1 | 21 |
| Osa06LNT0335200.1 | osa-miR2928 | Translation | 5.0 | 17.341 | 1 | 20 |
| Osa06LNT0335200.1 | osa-miR5157a-3p | Translation | 4.5 | 16.23 | 1 | 24 |
| Osa06LNT0335200.1 | osa-miR5157b-3p | Translation | 4.5 | 16.23 | 1 | 24 |
| Osa06LNT0335200.1 | osa-miR5488 | Translation | 4.0 | 7.068 | 1 | 21 |
| Osa06LNT0335200.1 | osa-miR5488 | Translation | 4.5 | 6.779 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0335200.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0335200.1 | 6 | nan | Morphological trait | Panicle/flower | RM276 | RM121 |
| Osa06LNT0335200.1 | 6 | nan | Physiological trait | Source activity | RM276 | RM121 |
| Osa06LNT0335200.1 | 6 | spf6 | Physiological trait | Sterility | RG213 | RM557 |
| Osa06LNT0335200.1 | 6 | qGT-6 | Physiological trait | Eating quality | RM276 | RM121 |
| Osa06LNT0335200.1 | 6 | nan | Physiological trait | Eating quality | RM276 | RM549 |
| Osa06LNT0335200.1 | 6 | nan | Physiological trait | Eating quality | RM276 | RM549 |
| Osa06LNT0335200.1 | 6 | nan | Physiological trait | Eating quality | RM276 | RM549 |
| Osa06LNT0335200.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0335200.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0335200.1 | 6 | sd6 | Morphological trait | Seed | RG138 | RG64 |
| Osa06LNT0335200.1 | 6 | sd6 | Morphological trait | Panicle/flower | RG138 | RG64 |
| Osa06LNT0335200.1 | 6 | tns6 | Morphological trait | Panicle/flower | RG138 | RG64 |
| Osa06LNT0335200.1 | 6 | tns6 | Morphological trait | Seed | RG138 | RG64 |
| Osa06LNT0335200.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0335200.1 | 6 | S5 | Physiological trait | Sterility | RG213 | C235 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)