© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0335400.1
AGGTACAAAAAGGGGTTTTTCTCCTGCAATCTAATTGTCAGTTCCGACGAATTTGTCAGAATGTGATATACACAGGGGCCCTGCCAGAGGGCTTCTTCAAGCTTGCTGATTAAGATGACTGACCTTTTATGTTGAACAACAATACAATTGATTGGGCCTTACACATTAATACTCAACCTTTGGGAACCAAAGAAATGACAAGGAAGAAAAAAAAATGTACAGTAGTTTTGCACAAATTTTCCTTTTCCCTCCTTTACCTTTTCTTTTGCTTGATGGGTTGGCTGCTTTTCTAAGCTCGGCATTTCTTTGCCTGTGGAAAATTTACAGTGTATTCGGACGGGTGGACAAAAATAGAACTTCACCTTTTTCACCTTAGCCATGCATTTGATGTTGCTATACAAAATAATGGTATAGTTACAGGTGGGCAGTTACTGGAAGGCATGAAAGACCAAGGCACCTTGTTTTAACGTTGTCGCCTGGTGTTGACCTCCATTTTCTTAGCCATCTGCTCGTTGCACTCGCTGCCTTTGGGGTTGATTGGCAAGCGTGTTTTTCAATAATGGTTTTAAGGAAGACATGATCTCTGAAAATGATGGACGCATCTTTGGGTCTGTTTGCCAGCATCTCCTTATTATCTCTGCTATGGTGGGATCCACATGAGCTGGAATATCAAGGCGACGTTGCTGAAAACCAACAGCTCCAACAACTTGCATGGGGTTCATACCTTCCCATGGCTGAAGTAGTGTGAAAAGTTCCCATAATATAACCCCGTAGCTGAAAACATCACATTTCTCATCAGATGGTTCGTTTCGAAGTACTTCTGGTGCCATCCACTCTGCTGTGCCAGCCGTGGATCTCGAGGAAAGGAAGGTACTATTCTTCATACGTGATAAACCAAAATCACAAACCTTCACAACCCAATTCTTGTCAACAAGAAGGTTTGGAGATTTCAAATCTCGGTGCACTACAACAGGGGAGCAATTGTGCAAATAATTCATACCACGAGCCACATCAAGTGCCATTCTTAGACGTCTTCTTTCATCCAATTGGTTGTTGGGTCGATGAATCAATCGAAACAAACTACCTCTTGGAAGAAACTCGGTCACGATAGAAAGATTAGGTACACGAGTAACAGCACCCATAAATAGAACAACATTTGGATGACGCAATCTCTTCATTATTTGGAACTCAGTTCTAAATTCATCCAGAGCATCGCTTGATATATCTTGCTGCAAGAATTTCTTCACTGCGACTTCTGTTCCATGCCATTCCCCTTTGTACACCTCTCCAAAGGATCCTAGCCCAACACGTTCTCCCAGAGTGATCTCTTCCCATTGGATTTCAAACTCTGCAACACCATCTAGGGCAATATCAGATCTTGAGCTTTCAGTCCCAACCGACTTGTCAGAGACTCTTTCAGCTTCCTGAGGTACTTCAACCAAATCTTTTTCTTTCTCGGGAACACTAGTTTGTCCATGATCAATTTCAAGCTGATTATCCCAGAAGTCATGTCTACCCTTCGGGATCAATTCATTTGCCCCTGAAGAACTTGGCAAACTAAGCAATTGACAACCAGGTTCCAAGTATTCGTACTGCTTGTTAACAGCAGCAGTTGTAGCCACAACTGCAGCAGCAGTCGCCGCAGCAGCAACAGGCACGTCGAGTTTGATATCACTGTTAGATTTAGCTGCAGCGACAACCATTGAGGATGCAACCACTGCAGCGGTTGCAACAGCAGCTGCTGCAACAGGCATTTGTTTTATAAGTTGTAGTGGATCCTCCTGGGGAGGTGCAGATGGTTCATACATATGTGAACTACCAGTACTGTTCCGGGAATCTGAGGGATGGTAGGTACCCAGCCCCTGGATAGGTTTAAGATCCAGAGGAATCCGATAAGGAACAGCCTTTGTTTGGAGTTCATGTCCAGGGGGATGTGGCACCGAAGGACCATGACAAAAATCAGCGTTTGTTGTAGATTCAAGCTCATTCATCCTCTTTATCATTTCATCTTTAGTTTGAAACAGAGATGTGTCATACACAATAAGGTCTTTAGGTTGTTCCCTTGATTCTTCTGAAAACAAATCAGGTGGTGGGACAACTCCATTTTCAAGTAAGACAGCATGGATCCTCTCAGCTATCTGGGGGTTTTCTTTTGCAGCACTAATCATATATTCTGAGACATCTTTCACTTTCATCCTTCGTACTGCTGGAGCACCACCCACCTCAGAAGATGAAGGAGAACTTGATGACGAATTATTCGCTGCAGAGGACTTATCTTTGCTCTGTGTACTCATGGTATGGTCTGTATTTCTAGATTCATGAATAACAGGCAAATTTTCACTTGTGCTTGTGCTAATTGATAGTTCCCCAAATGAACCAGATACCGCTGATCCCTGGCTGCCAGTCTGGCCAGTTGTTATGCCATAAGGATCAGAATGCCCAAAATTGCTGGGTGTGGATACTTTTTCAAGTGACTCATTCTCAAAAGAACCATACATAGAACTTGAGACTTCACTAAAGGAAGACCCCAACTGAGTGTTACAGTCATCTTTGTTAACATGGTGACTATCTGCAAATAAACTATCTTCAAATTCTCTACCCAAGCCCGCACCGTCTGAAGGTATAAGAGTACCTGGATCTGACATGAGATCAACAATGTACTCCCTTCCATCATTAAATTTCACAATGCTCAAAGCTCCATCATCCGATCCAGTGTACTGTCTTCCTTTAACTAGTCGACAAGGAACAGCGAGGCTGTCGGCCAAAACCTTAAAAAGCAGTGCACGGTGACGAGCCAGACCAATTGTTAACTCACCGAGAGGCATAACAGCACTTCTTATACTAGCTCTCAGAGAGCTGCTCACATTCTGGTACTTGGACAAAAAGCTTTCTGGATCGATGACTGGTCCACCCATGTAGTCGGAAACTAAAGTAGCTAGTCTCTGGACCAGGTTGTGCCCAACAAACTCTGGAGTTTTCGAGCGAACTTCCACAGCCATGATGAGTGCCTTCTGCTCAAGTTGTACAAGTTTGGTGTCTTGTGCTCTGTTGACCAATACGGCTTCTGTTTTGGATGCATGTGAAAATGGCTGTTGATGCAGTTCCGTCAAGGAGGGTATGGTTGGCAATGTGGGCTCGTCCCCAATGACAAAAATGTCATAGAAACCATCCAAGATTTTGTCGTCGTAGCTAAGGGCACTGAAACTCCAGTAGCGGAAGGCGACGACCTCGGCGGGGGAGCTCTGGAGCGGGCAGGAGCCGAGACTGATCTGCTTGGCTACCTCGATCTGCGTCGCCTCGGGATCCTCCCGCGCGCTCATCTCCAGCGCGAGCTGCATGTGGTACTCCTCCAGCTCCGCCTCCTGCTTCTCCTTCTCCATCTCCCTCTTCCTCACCGACTCCTCCCGCGACTCCCTCCTCGCCTTCTCCTCCTCCTCCTCGACCTCCAGCCTCCTCACCTCCACCGACGACGCCAACGCCGCCGCCTCCGCCTCCACCACCGCGTCCGCCGCAAACGGCGGCGATGGCGACGGCTGCGTCTGCGGCCGCCCGGTCACGGAGCTAAGCCAGCTCGAGATCCCAGAACCGTGCTTATGCTCGTGCTGCGCTCCACCACCACCGCCACCTCCACCGCCTCCGCCGCCCTTTTTGGAGACCGGCGGAGGAGGCGCGAGCGACGAGGCGCCATCGCCGGCCGAGTCGCCGATGTGGAGCTTCCGGAGGAAGTTCTTCATCCCGCTCCCGCCACCGTCTCCGCCGCCGCCGCTACCGATGCTGGTGGTGGTGGGGCGGTGGATCCAACATGGCTTCGGATGCGGAGGCGAATGGAAGAGAAGAGAAGAGCACAGCGAGAGAAAGGAGAAGGAGTCGCAGTATTGAC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0335400.1 | 6 | 6824460 | G | A |
| Osa06LNT0335400.1 | 6 | 6824506 | T | G |
| Osa06LNT0335400.1 | 6 | 6824785 | C | T |
| Osa06LNT0335400.1 | 6 | 6824805 | T | G |
| Osa06LNT0335400.1 | 6 | 6825388 | A | G |
| Osa06LNT0335400.1 | 6 | 6826577 | C | T |
| Osa06LNT0335400.1 | 6 | 6826580 | C | T |
| Osa06LNT0335400.1 | 6 | 6826677 | C | T |
| Osa06LNT0335400.1 | 6 | 6826873 | T | C |
| Osa06LNT0335400.1 | 6 | 6824138 | C | A |
| Osa06LNT0335400.1 | 6 | 6827045 | A | G |
| Osa06LNT0335400.1 | 6 | 6827225 | C | A |
| Osa06LNT0335400.1 | 6 | 6827434 | A | G |
| Osa06LNT0335400.1 | 6 | 6827902 | T | C |
| Osa06LNT0335400.1 | 6 | 6829349 | G | A |
| Osa06LNT0335400.1 | 6 | 6829485 | G | A |
| Osa06LNT0335400.1 | 6 | 6829548 | T | G |
| Osa06LNT0335400.1 | 6 | 6829769 | C | T |
| Osa06LNT0335400.1 | 6 | 6830286 | A | G |
| Osa06LNT0335400.1 | 6 | 6831307 | T | C |
| Osa06LNT0335400.1 | 6 | 6831686 | T | G |
| Osa06LNT0335400.1 | 6 | 6831706 | A | T |
| Osa06LNT0335400.1 | 6 | 6831750 | G | A |
| Osa06LNT0335400.1 | 6 | 6831770 | G | A |
| Osa06LNT0335400.1 | 6 | 6831815 | C | T |
| Osa06LNT0335400.1 | 6 | 6831974 | G | T |
| Osa06LNT0335400.1 | 6 | 6832006 | A | C |
| Osa06LNT0335400.1 | 6 | 6832123 | A | C |
| Osa06LNT0335400.1 | 6 | 6832717 | T | C |
| Osa06LNT0335400.1 | 6 | 6823272 | A | T |
| Osa06LNT0335400.1 | 6 | 6828309 | A | T |
| Osa06LNT0335400.1 | 6 | 6828429 | T | C |
| Osa06LNT0335400.1 | 6 | 6829168 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0335400.1 | osa-miR5534a | Translation | 4.5 | 19.911 | 1 | 21 |
| Osa06LNT0335400.1 | osa-miR5534b | Translation | 4.5 | 19.911 | 1 | 21 |
| Osa06LNT0335400.1 | osa-miR5796 | Cleavage | 4.0 | 19.398 | 1 | 21 |
| Osa06LNT0335400.1 | osa-miR5806 | Cleavage | 3.0 | 20.457 | 1 | 21 |
| Osa06LNT0335400.1 | osa-miR162b | Cleavage | 5.0 | 22.058 | 1 | 21 |
| Osa06LNT0335400.1 | osa-miR169i-5p.2 | Cleavage | 5.0 | 13.361 | 1 | 22 |
| Osa06LNT0335400.1 | osa-miR2919 | Cleavage | 5.0 | 6.627 | 1 | 19 |
| Osa06LNT0335400.1 | osa-miR2919 | Translation | 5.0 | 4.99 | 1 | 19 |
| Osa06LNT0335400.1 | osa-miR5492 | Translation | 4.0 | 14.349 | 1 | 21 |
| Osa06LNT0335400.1 | osa-miR2919 | Cleavage | 4.0 | 15.122 | 1 | 19 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0335400.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0335400.1 | 6 | nan | Morphological trait | Panicle/flower | RM276 | RM121 |
| Osa06LNT0335400.1 | 6 | nan | Physiological trait | Source activity | RM276 | RM121 |
| Osa06LNT0335400.1 | 6 | spf6 | Physiological trait | Sterility | RG213 | RM557 |
| Osa06LNT0335400.1 | 6 | qGT-6 | Physiological trait | Eating quality | RM276 | RM121 |
| Osa06LNT0335400.1 | 6 | nan | Physiological trait | Eating quality | RM276 | RM549 |
| Osa06LNT0335400.1 | 6 | nan | Physiological trait | Eating quality | RM276 | RM549 |
| Osa06LNT0335400.1 | 6 | nan | Physiological trait | Eating quality | RM276 | RM549 |
| Osa06LNT0335400.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0335400.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0335400.1 | 6 | qPSP-6 | Physiological trait | Flowering | R2171 | RZ144 |
| Osa06LNT0335400.1 | 6 | nan | Physiological trait | Eating quality | C1478 | RZ667 |
| Osa06LNT0335400.1 | 6 | sd6 | Morphological trait | Seed | RG138 | RG64 |
| Osa06LNT0335400.1 | 6 | qPGWC-6b | Physiological trait | Eating quality | R2147 | C1478 |
| Osa06LNT0335400.1 | 6 | tns6 | Morphological trait | Panicle/flower | RG138 | RG64 |
| Osa06LNT0335400.1 | 6 | sd6 | Morphological trait | Panicle/flower | RG138 | RG64 |
| Osa06LNT0335400.1 | 6 | tns6 | Morphological trait | Seed | RG138 | RG64 |
| Osa06LNT0335400.1 | 6 | acl(t) | Physiological trait | Eating quality | nan | nan |
| Osa06LNT0335400.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0335400.1 | 6 | S5 | Physiological trait | Sterility | RG213 | C235 |
| Osa06LNT0335400.1 | 6 | alk(t) | Physiological trait | Eating quality | nan | nan |
| Osa06LNT0335400.1 | 6 | gel(t) | Physiological trait | Eating quality | nan | nan |
| Osa06LNT0335400.1 | 6 | nan | Resistance or Tolerance | Blast resistance | C1478 | R2171 |
| Osa06LNT0335400.1 | 6 | qNPB6-1 | Morphological trait | Panicle/flower | RZ667 | R2147 |
| Osa06LNT0335400.1 | 6 | nan | Resistance or Tolerance | Lodging resistance | C1478 | R2171 |
| Osa06LNT0335400.1 | 6 | qET-6 | Physiological trait | Eating quality | R2147 | C1478 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)