Transcript

Sequence

>Osa06LNT0335500.1

ACAAGAATATGTGATTTAAATACAACAACTCTGATGGGGTGACATACATATAGTTCTTATGTAGCTAAAAATAGGGGAGCAATGTAGGTAAGTTAAAAATGCTAGGCAACTGCTACTATATGGACTGATAGAGAGGATTTTGCCGTTGAACTCATAAATCCCTTCCCTAAGAAATGTGCCATCACTGCCCATATACTTTTTGCTTGTCTGATGCACCCTGCAGACACTTTTATGATCATATATAGACATAAAACACTAATGAATTACCTTCAGTCACTTATTGATTTTACTTTGGGATATCGGCCAATCAATACGTGATCCTTTCGTTTGTGCTTCCAAAAATATCTGCAGGCCTGCACATAAAAAAAATGTTGTGAATCAACGGAATATGGCCTTCTAACGGTGAAATTTCAGAAGCTTAATGCAGGTAAAGCATTTGTAACCTCATATGTTCAGACCTGAATGACCATGCACTACATACAGAAAAATCAAGCAGAGGCTGCCGGGTTTGATATGAAAGAGAGCAGTGAGACAGAGGACTGTTAAACAGAAGTGAGCAATCAATTTGAGGATTCGTATCAGCAGGAGGAGATTTAGCTACTGCCACACCCACGTCGAGCTTCACCTTCTGATTACCGCGTGCTTGTGGGGGCTCGATGCGGGCACAGATCTTGCAAGAACCAAAGTCTGCGTGGGATGGGGAAGGAGACGGAAATGACTCGCAAGAAGTCGATGGGAAGACAGCGACGGTAACCACTGGCTCCGCACGGCGGCGGCGACGGCTGGCTCCGCGAGCTTGAGAAGAAGGCGGCGGCTCCGGCTTCACGAGCTCGAGGGGAAGACGGTGGCCGTGGCGGCGGCGGCGGCTCCTCGTGGGAAGAGGAGAGGGATTAGGGTTCGAGAGTAGCTTCTGGCTACTGGGGGAGGATGGGGGCACGAACGTCTCT

Coding Potentia

Explanation	CPC Score
noncoding	-1.27261

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0335500.1	6	6907203	G	C
Osa06LNT0335500.1	6	6907572	G	A

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0335500.1	osa-miR5826	Cleavage	5.0	14.537	1	24
Osa06LNT0335500.1	osa-miR5816	Cleavage	5.0	12.067	1	24

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0335500.1	6	qLDLJ-6-1,2,3	Physiological trait	Source activity	RM217	RM3
Osa06LNT0335500.1	6	S5	Physiological trait	Sterility	RG213	C235
Osa06LNT0335500.1	6	nan	Resistance or Tolerance	Blast resistance	C1478	R2171
Osa06LNT0335500.1	6	qNPB6-1	Morphological trait	Panicle/flower	RZ667	R2147
Osa06LNT0335500.1	6	nan	Resistance or Tolerance	Lodging resistance	C1478	R2171
Osa06LNT0335500.1	6	nan	Physiological trait	Eating quality	RM253	RM162
Osa06LNT0335500.1	6	nan	Morphological trait	Panicle/flower	RM276	RM121
Osa06LNT0335500.1	6	nan	Physiological trait	Source activity	RM276	RM121
Osa06LNT0335500.1	6	spf6	Physiological trait	Sterility	RG213	RM557
Osa06LNT0335500.1	6	qGT-6	Physiological trait	Eating quality	RM276	RM121
Osa06LNT0335500.1	6	nan	Physiological trait	Eating quality	RM276	RM549
Osa06LNT0335500.1	6	nan	Physiological trait	Eating quality	RM276	RM549
Osa06LNT0335500.1	6	nan	Physiological trait	Eating quality	RM276	RM549
Osa06LNT0335500.1	6	amy6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0335500.1	6	asv6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0335500.1	6	qPSP-6	Physiological trait	Flowering	R2171	RZ144
Osa06LNT0335500.1	6	nan	Physiological trait	Eating quality	C1478	RZ667
Osa06LNT0335500.1	6	tns6	Morphological trait	Panicle/flower	RG138	RG64
Osa06LNT0335500.1	6	sd6	Morphological trait	Panicle/flower	RG138	RG64
Osa06LNT0335500.1	6	sd6	Morphological trait	Seed	RG138	RG64
Osa06LNT0335500.1	6	tns6	Morphological trait	Seed	RG138	RG64

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus