>Osa01LNT0030800.1

CTTTACACAATATTATTGTTTATGTTGGGGTTCTATAAATACATAGTAATAATGGTAAGAGAAAAGTACATTTTACCCCCCTGAACTATCGAGGTCGACCGAATTACACTCCCGAACTCGAAAACCGGACATTCTACACCCTCAACTATTGAAACCGGACAAATTACCCCCCTGAGCACTGTTTTAGGTGGTTTTGGGATAGACTTGCTGACGTGGCATTCCAGCGTGGCAAAAAATAAATAAAAAAAATAATGGACCCACATGTCAGTCTCTATATCTCCTCTCTAATTCTCTATCCCCTCGCACCGGCCAGCCTCCTCCCCTCGCGCCGGCGGAGCTCCTCGGGAGGCAGAGGCGGAGCTCCTCAGGCGGCGGGAGGCTGAGGCGAAGGCGGAGCGGGCGGCTGGCAGCGGGAGACGGAGCTCGCACGGGCCGTGCCCGAGCTCGTCGTCGTCGTCTTCAACCTCTTTGTCCACCTCGGTTGCGGCGCTCGGGCGGCCGCCGACCACCGCATTAGCAAGGGGCGACGCCCGTGCCCCCTACTGCCGTGCCGCCGCGCCCCGCCGCCTTCCCGCGCGCCACCGCCGGCTCTACATGCTCCCTGCTGCCGCGCTGTCGCCGCCGCGACGCCCGAGGAGCTCCGCCTCCGCCGC

Explanation	CPC Score
noncoding (weak)	-0.54594

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa01LNT0030800.1	DTM_#DNAt_MULE_japo_Os0166	Chr1	.	27162812	27164111	591

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0030800.1	osa-miR5837.1	Cleavage	4.5	24.896	1	21
Osa01LNT0030800.1	osa-miR818f	Cleavage	4.5	22.611	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0030800.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0030800.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0030800.1	1	QPh1b	Resistance or Tolerance	Submergency tolerance	RZ527	RZ154
Osa01LNT0030800.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0030800.1	1	nan	Morphological trait	Seed	CDO118	CDO455
Osa01LNT0030800.1	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0030800.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0030800.1	1	yld1.1	Physiological trait	Source activity	RM5	RG462

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus