© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0337400.1
TTTGCAAAAAAAACAACTCGCGTATTTCCCATTCTTTATACAATTCCTGTTATAGTGTGGTAAAAAATTTACACGTATTGATCTCTAGGCTGCCTGGATTGATCGGCGTCAGCCCTCTCCAGGGAGCTCTCGATCCTGCCCGTTGTGACAAAAATAACATACACAAGGCACAATAGGATCGACTATTCTAACAAAAAAAAAACGAAAAAAGAAAGTTAAGAAAAAAAAAACGAACGGCATGTTCTTCTCCCATCATTCCATTTTGCACTTGAACCGTCTGGATGCGTCTGATGCTTGGATATCATCAATGGCATCGAGACATCAAGATGACCATTGGTCAGGGACAGTCAGGAAGTACCTCGACATGGCCTTCCTGAACCTCTTCTTGTACTGGTCTGGGGAAATGATAGTTGGGAGCACGTCTCTGGAGCCACCCAGGAACCCTGACGCCTTCACCCAGGTCTCCAGCTGCTTGTCCCAGGTGTACTGACGAAGGTAGTCGATGATTCCCATCACAAGCTCTTTGCTTTCTTCATCAATGCCAACTAATAGTGAGTAATCCATCACATCCACCGACGCCAGAAAAGAAGTATCATTCCAGACAGCTCGCTCCAACCTTCGTTTTGCTTTGCTTCCGAGAAAAATGGGCTTTGTATGAAGTGTCTCTAATAGATTCAGATCTAAGAGAACTTTGTTGTTTCCTGATGTATCAGGATTGTAACGGGAACGCAAAGAGCCTTTCAGGTCATATATTCTTGATATCTTCTTCTTGTAAAAAAGATTTTCCATGACCATTACATCCAACTTTAGTTCCTTGCCATCTCTCAAGTTCCTGGCAGCAACCTGGTAAAGACCAAGAACTTTAGCAAGGCACGTGGGGCTTCCTGAAGATACAGATTCTGTTAAATATTTGAAGTACTCAGCTGCATAGTCCTCAAATGAATCTAGTTCCGTTCGGGTCACTTGCTTTATGACAAATCTGTCATCTAGTGTTTTGGCGAAGTATACATTACTCTTGCCACCTTGAGCACTCCATCTCTTGCATCGACTCAAAGAACGAATGTAGTAAAGCTCGTCTGGACAGCACTTTCTTCTGATTGCATCAAATTGCTTTGCAAAATAACATGTTACAGAAAATTTAGCTTTATCCACAGAAATTGAATCGTCATCCTCAAAAGAAACTGTCAAATGAATATCCTTGGAGTCATTATTTCCAGTTCGAGGTTGGTCAGAACCATAGCTCCACGTGGATACATCTAATGAACTCCTAGAAGAGGAATCCTGATCCAAAGAATTTCCAACACTAAATCTGCCCAAGTCATTTTGCTGGTCCAGCAACGGCAACATGAATTTATGATAATCAGGAACAGTCATGGCATGGGCTATCATGCTGGATGGCTCATCATCGTAAATTGGAACAACAACATCTCCAGCATTTTGAAGAAGCAAACGACCTTCACCATGCATTATATCAGGAACTGATAGCTCAGTTTTGAATGTCGGGGACAAACCCCTGCCTGTTCTCTCAAGAGCTTTTGGAGGCTTTTGAGAATAAGCTCTTCTAATGATTCCGTCTGAGCCATCTACAGGTGATAACCTATTTTTGAAATTGATGGCAGAATCAAATGAATTGATTCTGATTGGTGCAATAACTCTCTGGTATGAGGGATCATCCACCAGAGCAGCAGGTACAACTGGAAGTGCCTCAATGCTACACTTTGATGGGTCATTAGCAAGCTGACTAGAGCCGGTCCATGCTAAGTCAATTCTATCAGAAAGGTTGGTTGCAGAAGATCGTGATCTCTCAAATGTTTTTTCAAGCTCATCAGTCAGTATCCCATCATTCGGTCGTTCAGATGGGCCTGGAACAACTGAACTGGAATAGTCTTCAGCAGACTGCGGAGGTACTTCACCTTTAATGTCGGTTTTCAACCCAAAATGTGTCACAATTGTGTCAATTTGGTCTCCCCTGATCAATGGTTTTATACTATTTGCAGCCACCGTCAATGAACTTGACTGAGTATGTTCTAGTGAATTCTCCCAATTCTCATGTGTACCAGGAATCTCAACCTTTGATTTTTCTACAAAACGTTCAGGAATCTTATCAAGACACTGCACGTCAGTTGGCACAGTATGACAGTTTTCCTTGGTAAGTGCCTGCATCATGTACAGTCTACGATCCCATATATGTGCATCAACTATAAGCTCTCTCCTCAGGCGATTGAGCTCAAGAATATCTATAGCCAGTTCAAGTGTATTCAGGTTTTCTGTGCTAGCAAACCTTGACAATACATCATACTTCTTCCATTCAACTCTAATCAAATCCTTAAGATCAATAACATGTTTAGGCAAGCCTGTTTTCATGCTCATGTTTTGGGCTGAAACTATGTTTTCAATTGAGTCAAGTTTGTCGAATATCTCCTTGTAAAAGTACTCCTTCCTGCTGGCTACATCAGCAGCATCTTTGATGATCCAATCTTGAGCCATTGGATAAGTGAAGTCCAGTACTGCGGGTGGCAAGTTCACGGAAAGAATATCCACAGGAGAATAGCGGAAGACAGCAACCATGCTTCCATACCCATAAAAACGAAGGCAGTCCCTCTGAAGGGAATGTCCACAGGAGGCAACCCGGTTGGCCGTTGTGTGATTCGAAAAGCTAAGTTCCAAAAACTTCCCAAAAGAAAGTCCACGTGCCGCATCAGACATCACTACTCTTTGTGTTGCTGGAGGGATTCCATCTTTAGGTTTGCACCTGAGGCACCTGTGCCACATCCATATCTTCCCATCATTCTCCCCAGGTAACCTTACAGAGGCAAGATTTCTAACACTGATTGTGAGACTGCCTTGTCGATGGGTGTAGCATCGAACATGAGATTCTGCAGGTTCCTTGCAAGATTCACAGCACGAAATCTGATTAAATAAATCTTCGCGGAAATATCTACCGAGTGGCTTATCAAAATTACCGTAGAACTTTATGCGAAAGAGCTGCGATTGCTTGCATACAACCCCTCTCTGAGGACATGCGATTGACAAGGACACTAAAATGCTTTGTGGATTATCAGATGTTGGGAAATATTCAATGTGGTTTTCATTATGGTCACGTACAGCTAATCCTGCATGTTCTTCATCTGATGTATTTTGCCAACCATTATCCAAGTCACTTTCAACTCTATGAAAACGTGGTCCCATTGGTGAGCTTTTGGATGTCTGAACAATAATGTCTGAAGGTGGTACACAACCCTTATCAAGGGAGGATCTTGGAGAACGAGGATATATACCATTAGTGACACCGATGTACTCTGCCTGATTTAAGTTAGGTCCCAGAAAAGATTTATCCGCAGATAGCGGGTTTTCAGAATCATTAAGGCAATTTGCAGGCATGTTGCACCCATTATCTGAAGTTTTCTGACCAACAATTTGAAAATCGTTAAAATCCTGAAGACAGTAACTTGAGGAACAGTTCCCACCATCCACATGATTCTCAAGTGGAAGAGCTGAAATATCTGAAGGGATCTTTGGTAGTGTTGCACCCTCATCTGCAAGATATGAGGTCTCAAGTGATAGGTGATAGGCTGCAAATAGTGCAAACTGTAGAGCAAGTTTAACCCTCCTTAACTCTTCGTGGGATGTGCCTCTTAGAAGGATCGTGCAGCCCAACCGTCTTGGACAACCATCAAAAAACATCAGTGTCTTGGCAGACTTCTTGTTTGCATTCTTTGGTGATGAAGACTCTGAAACTCGTTCAATCCAGAATGTTTGGCACTGTCCAAGCCTTACCGAAGTAACATTTTCAATGGATGAAGCAATTTGAGCACCTGTGCAGCGTGATATCCTTTCTAGAAGTGATCTCTTGACATTCAGAACTAAAGAGATATCTTTTGCAAGAAGCTGTTGAGCATATAGTGGCACGCTTTTTTCAACGAGCAAAACATGAGGTCGTTGGGCCTCTATTTTTGCAACTGCAATCTTAAGGTATTCCTTTTCCTGTTCAAGAATGCTGTTTATCGATGCTAGTTTGTTCGAAGCCTTTTGGTGTTCCAGTGCTCCCCCCAAAAGAAGCAATCTAGGGTTCTCATGCTTTGACACCATGCGTTTATGTTTTACATTCTTAGAACAAACTACACCTTTAATGAAAGTACTATCATTGGGATTCCCTGATGCTACACATTTGACTTTGACATAGTCCGTGGGATCCATGCTACCACCTTTACTTGTATCTGGCCTTACAAAGGTAGCCGCCTGCCATGCTAATGAGGATATTATGTCTGACCATACATCCACAGGATCAACGCCATGACCTTGGAGCAGCTGGGACACAAGAGCCCTGAAATGCCCATGCAAAGCATTCCTTAGGAACTCTTTATGGGCTATATTGTGTTTTCCTTTTATTCCCAGCGAATCATCTTCACCACCATGATCATGGTTAACA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0337400.1 | 6 | 8317794 | G | A |
| Osa06LNT0337400.1 | 6 | 8318007 | A | C |
| Osa06LNT0337400.1 | 6 | 8318976 | G | A |
| Osa06LNT0337400.1 | 6 | 8320002 | A | G |
| Osa06LNT0337400.1 | 6 | 8321090 | A | G |
| Osa06LNT0337400.1 | 6 | 8321253 | T | G |
| Osa06LNT0337400.1 | 6 | 8321728 | T | G |
| Osa06LNT0337400.1 | 6 | 8322644 | T | G |
| Osa06LNT0337400.1 | 6 | 8323008 | T | A |
| Osa06LNT0337400.1 | 6 | 8323075 | A | G |
| Osa06LNT0337400.1 | 6 | 8323576 | A | G |
| Osa06LNT0337400.1 | 6 | 8323918 | T | C |
| Osa06LNT0337400.1 | 6 | 8324210 | T | C |
| Osa06LNT0337400.1 | 6 | 8322966 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0337400.1 | osa-miR5525 | Translation | 5.0 | 15.301 | 1 | 22 |
| Osa06LNT0337400.1 | osa-miR5543 | Cleavage | 4.0 | 18.587 | 1 | 21 |
| Osa06LNT0337400.1 | osa-miR812t | Translation | 5.0 | 14.559 | 1 | 24 |
| Osa06LNT0337400.1 | osa-miR812u | Translation | 5.0 | 14.559 | 1 | 24 |
| Osa06LNT0337400.1 | osa-miR5836 | Cleavage | 5.0 | 17.096 | 1 | 21 |
| Osa06LNT0337400.1 | osa-miR5079b | Cleavage | 5.0 | 13.914 | 1 | 22 |
| Osa06LNT0337400.1 | osa-miR160c-3p | Translation | 5.0 | 13.891 | 1 | 21 |
| Osa06LNT0337400.1 | osa-miR172a | Cleavage | 4.5 | 13.48 | 1 | 21 |
| Osa06LNT0337400.1 | osa-miR172b | Cleavage | 3.5 | 13.48 | 1 | 21 |
| Osa06LNT0337400.1 | osa-miR172c | Cleavage | 4.5 | 13.48 | 1 | 21 |
| Osa06LNT0337400.1 | osa-miR172d-3p | Cleavage | 4.5 | 13.48 | 1 | 21 |
| Osa06LNT0337400.1 | osa-miR1432-3p | Translation | 4.5 | 21.39 | 1 | 21 |
| Osa06LNT0337400.1 | osa-miR1855 | Cleavage | 3.5 | 19.479 | 1 | 21 |
| Osa06LNT0337400.1 | osa-miR1876 | Translation | 4.5 | 12.604 | 1 | 24 |
| Osa06LNT0337400.1 | osa-miR2105 | Translation | 3.5 | 19.91 | 1 | 20 |
| Osa06LNT0337400.1 | osa-miR2869 | Translation | 4.0 | 19.932 | 1 | 21 |
| Osa06LNT0337400.1 | osa-miR812n-3p | Translation | 5.0 | 14.559 | 1 | 24 |
| Osa06LNT0337400.1 | osa-miR5079a | Cleavage | 5.0 | 13.914 | 1 | 22 |
| Osa06LNT0337400.1 | osa-miR5144-3p | Cleavage | 4.5 | 19.326 | 1 | 21 |
| Osa06LNT0337400.1 | osa-miR5492 | Cleavage | 4.5 | 23.516 | 1 | 21 |
| Osa06LNT0337400.1 | osa-miR5497 | Cleavage | 3.0 | 21.785 | 1 | 21 |
| Osa06LNT0337400.1 | osa-miR5500 | Translation | 4.5 | 15.43 | 1 | 22 |
| Osa06LNT0337400.1 | osa-miR2275c | Cleavage | 4.5 | 21.089 | 1 | 23 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0337400.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0337400.1 | 6 | nan | Morphological trait | Culm/leaf | RM121 | RM136 |
| Osa06LNT0337400.1 | 6 | nan | Morphological trait | Panicle/flower | RM121 | RM136 |
| Osa06LNT0337400.1 | 6 | qHD-6-1 | Physiological trait | Flowering | RG424 | RZ667 |
| Osa06LNT0337400.1 | 6 | qPH2-6-1 | Morphological trait | Dwarf | RG424 | RZ667 |
| Osa06LNT0337400.1 | 6 | qTN2-6-1 | Morphological trait | Culm/leaf | RG424 | RZ667 |
| Osa06LNT0337400.1 | 6 | nan | Physiological trait | Flowering | R2171 | R2123 |
| Osa06LNT0337400.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0337400.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0337400.1 | 6 | sd6 | Morphological trait | Seed | RG138 | RG64 |
| Osa06LNT0337400.1 | 6 | qPHw6-2 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0337400.1 | 6 | sd6 | Morphological trait | Panicle/flower | RG138 | RG64 |
| Osa06LNT0337400.1 | 6 | nan | Physiological trait | Eating quality | RG64 | R2171 |
| Osa06LNT0337400.1 | 6 | qSFWd6 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0337400.1 | 6 | tns6 | Morphological trait | Panicle/flower | RG138 | RG64 |
| Osa06LNT0337400.1 | 6 | tns6 | Morphological trait | Seed | RG138 | RG64 |
| Osa06LNT0337400.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0337400.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0337400.1 | 6 | qSL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0337400.1 | 6 | S5 | Physiological trait | Sterility | RG213 | C235 |
| Osa06LNT0337400.1 | 6 | qRS6-1 | Morphological trait | Shoot/Seedling | RZ667 | RG424 |
| Osa06LNT0337400.1 | 6 | qLVBSL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0337400.1 | 6 | qLVBTL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0337400.1 | 6 | nan | Resistance or Tolerance | Blast resistance | R2171 | RG64 |
| Osa06LNT0337400.1 | 6 | nan | Resistance or Tolerance | Blast resistance | R2171 | RG64 |
| Osa06LNT0337400.1 | 6 | gp6 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0337400.1 | 6 | qGY6-1 | Morphological trait | Seed | RZ667 | RG424 |
| Osa06LNT0337400.1 | 6 | qTL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)