© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0338400.1
GGCAAATTTTTGCTTGTATTTTCTAAGTTGGTTCACTTTCGGATCTAGACAAATTTGGATAAATAAACCTACACTAACAAAACCACACACCACCAACTCCTGCCTTCGAGGACTCGCCTCACATTGTACACAGAACTCTTAATCAATAAACCTACACTAAGCATCAAAGCTCACCCAATGGCTAATGTGGAATAGGACCAAATGTAGATATCTCAATCATGTATGCGCTTTATTTCCTCAAAACTTTGTCCACAGCAGTCCTCTGTGAATCTGTTAGGGCCTGGCAAAGATATTCAAAAAGCAGCCGATCACTCTCCCACAATTTGACAAAGATGTTTGTTAGAAAGTCCGACAGCTTCACCTCATTAAGAGAGTCAGCTTTTGCCAGGTCATCATCATAACTTCCGTCGTCATCCTCATCAAAAACTTTCGCCATTGCATTTAGATGCTCAACTGATGGCTTAGCATTTGAAGGAACTGATGCTGAGTATATCATATCATGTGGAATACTAGAATCACCATTCTGAATCTCTTCCCAGTCACTATCCTCTTCACAATCGTCTTCATCACCAACAACTTGTTCCTGAATTTCAGCTAAGGTATCTGCTAACAGTGAGAAGATCTTAGCTGGGAGTGGAATCTTGGTCCAGTGATCAGGAGCCACCCTAGCTTTTGACCGTGTAGTTATACCTGCGCTAGTCTTAATAATATGCCCTTGGACTTCAATCCTAGATAACTCAGGATGACGAGTAGATATGAGAAGAGCTAATGCAGTGGTTGTAACCTTTATCTGATAGGCTCCTTGAATTTCACTTTGTAACTGTGACCATTCAGACATGATATAAGCAAGTGAATTGTTATAACCCTGAGCAGGAATTGCAAGTAAGAGGTTGATAAACTGATCAACATTTGGTGCACTCAGATGTACAAGTCTTGCTACTATAACAACAAGAGAGCTCTTCAATCCAGTAATGCTGCTGGATTGCATACGTCTCACAATAGCAGCAATAAGCTCAGGAAAGTGGGGAGATAGGTGTGAAGGCAGATGTATAATAAGTTGTAAAATATAACTCCCGACAAATAGTGATACTGAACTTTCCAACACAGGATCTAAAAGCCTTGAAGCTGCATCGAGTAGCATCTTCAGTGTACGTCCTTGTCCACCACCCCAGAGAAGCAACTCTTGCCGCCCACCCGATATAAATGCTGCCAAACATTCTGTCGCATTCTGCATCTCTCCATGGTCATCACTTTCAAGAACGATTTGAATAATAGATGTAAAACATGTATCAAAGATCGCCTTAACCACAGTAGTTGGAGCATTTTTCAGTATCATCGTCAACAGGTCCAGTGAGCCTGCAGCAAGACCGTTCTGCTGGATCTTGGGCTTTTCTAAAATGGACCCAATTGTTGGCAGAATCCGTGATACAAGTGGTTCTAAACATCCAGGAGCATTCTTGATGGCCTCTAGCACTTCAACAGCATCGATGCTGATGAATGGATCAGCAATATGTTGGGCCCAAACATCTAGGATGATAGGAGAGATGACTGGCTCAATTAATGTTGACTGTTCACCACAAGATTTGATGGTTGATTGGAGGGTTTCTAGAACAAGATGCAGCGTTTCATCAGATGCCTTCCCCAGAAGATCAACAAGAGATGAGAGTATGCCCATAATGTTGGGCACATTCAAGCTCTGGTTAGATTCTGGCAGAAGTTGCGCCAGTGCCCTACAAGCACCAACTTTAACTGGGGGAGGTACATCTGAGGCAATTGCATGAGCAGCACTGCATAGATACTGTTCGCAGATTTCCTTACTTATCACTGAAGAGAACTTAGACAGAATGGAGAATGCACGTGCATGAAGAAACGGGTACTGGTGCACCTCTGTTCCCACAGTGTCAGTTACCATCTGCTCAAGTAAATCTCGCACGTTGTAACCAGAATCCTGTGCTTCACAGAGCTGTTCGGAAAGTGAACCTAGAGCAAAAAATGATGCTTCATGCAGTCTCCACCAGTCAGTAGAACCCGCTTTCTTTAGTTCACGTGATTCATGAAAACGCATCTGTGAAGCCTCCAAAACTGACTCTATTCCGTATTCATCGTAAGCAGTAACTATCTCTTCCAGCAAAAGAGATCCAGATACGCGACAGCTATAAGTCACATCGTCCTCATCAGCAACATATTGGTTAGCATCACGTGACCAGTTTTGCAACTGTTCTTCAGTTATCTGTTGATACGCTATAGTATAATATGCTAGCTCTTTAATGTTCCCAGCAATGATCTTTGCTAACCGTGAATTCCCCACAATTGATATCCATAGCTCAAATAACTGAATCCCAAAAGACTCCAGACTTCTTTCACTACCATCAGAATCATACCCAACAGAATCCACATCTTCCGAGGCTTGAATCATTGACAATTGATAGACCTTGAAGGATGAGACAAAGGTCTGCCATAAAGGGGCAAGAACAGCAGAAATTTTGGCTTCAGGCAACCCAGGAAAGTTCTGGACAAGCTGAAGTAAACATTTAAGCACCTCCATCTGCATGTTCCAGTCATCAGGATTATGGGACTGCACCGGTGAATTCAAAATTGCAGAGAATTGCTCCATGAGTGGATCAAGCATTGAACTTATCAAACTGACTGTTTCTCTCTTATATACACCAGTCATTGATCCAAGCATGGAAATACATGAATGGACTATTGCAAGGGCCTTCGCACGAAGAGAATTTTCGTACAGATGAGGAGATGATATTATACTGTACAATGAAGGGAAAAGTTCTGGCACCAATTTTGGAATGCATGTATCATCCAAATCATCCGATAAAAGAGCTAGACATCTTAATGCTCCACGAACTCCACAACCATTGCTTTGATCAGAAATTAACTTTAAGAGATAGGGAAGTAACTCAGGCCAGTCTTCAGGCCAATCTTGCTGCCCAATAGCTGCTACAGCCATGCCAATAGCAGTACGAATCTTCCCGTGAGAATCATCCAACGATGTAAGGAGGAGTTGCCGTATAATCACCTTTTCCGAGGCAGAAACAACAGGAGGCATGAAATTCTCTTCGTCTTCCTGCCAATGCTGTTTGATGAACTGCTTTAGCAAGACAGCAGCAAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0338400.1 | 6 | 9275213 | C | T |
| Osa06LNT0338400.1 | 6 | 9268922 | A | C |
| Osa06LNT0338400.1 | 6 | 9268923 | C | T |
| Osa06LNT0338400.1 | 6 | 9268936 | T | C |
| Osa06LNT0338400.1 | 6 | 9270136 | T | A |
| Osa06LNT0338400.1 | 6 | 9270532 | T | C |
| Osa06LNT0338400.1 | 6 | 9270608 | A | G |
| Osa06LNT0338400.1 | 6 | 9271476 | G | A |
| Osa06LNT0338400.1 | 6 | 9271577 | A | G |
| Osa06LNT0338400.1 | 6 | 9272228 | T | A |
| Osa06LNT0338400.1 | 6 | 9272388 | G | A |
| Osa06LNT0338400.1 | 6 | 9273109 | A | T |
| Osa06LNT0338400.1 | 6 | 9274991 | G | A |
| Osa06LNT0338400.1 | 6 | 9275155 | T | C |
| Osa06LNT0338400.1 | 6 | 9275974 | G | A |
| Osa06LNT0338400.1 | 6 | 9278392 | A | G |
| Osa06LNT0338400.1 | 6 | 9273138 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0338400.1 | osa-miR5797 | Translation | 4.5 | 21.313 | 1 | 21 |
| Osa06LNT0338400.1 | osa-miR159a.1 | Cleavage | 4.0 | 23.384 | 1 | 21 |
| Osa06LNT0338400.1 | osa-miR159b | Cleavage | 4.0 | 23.384 | 1 | 21 |
| Osa06LNT0338400.1 | osa-miR159c | Cleavage | 3.0 | 23.384 | 1 | 21 |
| Osa06LNT0338400.1 | osa-miR159d | Cleavage | 3.0 | 23.384 | 1 | 21 |
| Osa06LNT0338400.1 | osa-miR159e | Cleavage | 3.0 | 23.384 | 1 | 21 |
| Osa06LNT0338400.1 | osa-miR159f | Cleavage | 4.0 | 23.384 | 1 | 21 |
| Osa06LNT0338400.1 | osa-miR319a-3p.2-3p | Cleavage | 5.0 | 22.897 | 1 | 20 |
| Osa06LNT0338400.1 | osa-miR319b | Cleavage | 5.0 | 22.897 | 1 | 20 |
| Osa06LNT0338400.1 | osa-miR167h-3p | Cleavage | 4.5 | 23.126 | 1 | 21 |
| Osa06LNT0338400.1 | osa-miR435 | Translation | 5.0 | 14.224 | 1 | 20 |
| Osa06LNT0338400.1 | osa-miR2098-3p | Cleavage | 5.0 | 23.323 | 1 | 20 |
| Osa06LNT0338400.1 | osa-miR5159 | Translation | 5.0 | 15.226 | 1 | 24 |
| Osa06LNT0338400.1 | osa-miR5486 | Cleavage | 3.0 | 14.35 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0338400.1 | 6 | qPHw6-2 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0338400.1 | 6 | qSFWd6 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0338400.1 | 6 | sd6 | Morphological trait | Panicle/flower | RG138 | RG64 |
| Osa06LNT0338400.1 | 6 | tns6 | Morphological trait | Panicle/flower | RG138 | RG64 |
| Osa06LNT0338400.1 | 6 | sd6 | Morphological trait | Seed | RG138 | RG64 |
| Osa06LNT0338400.1 | 6 | tns6 | Morphological trait | Seed | RG138 | RG64 |
| Osa06LNT0338400.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0338400.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0338400.1 | 6 | nan | Physiological trait | Eating quality | RG64 | R2171 |
| Osa06LNT0338400.1 | 6 | S5 | Physiological trait | Sterility | RG213 | C235 |
| Osa06LNT0338400.1 | 6 | qNFGP-6 | Physiological trait | Source activity | RM136 | RG456 |
| Osa06LNT0338400.1 | 6 | qSF-6 | Physiological trait | Source activity | RM136 | RG456 |
| Osa06LNT0338400.1 | 6 | nan | Resistance or Tolerance | Blast resistance | R2171 | RG64 |
| Osa06LNT0338400.1 | 6 | nan | Resistance or Tolerance | Blast resistance | R2171 | RG64 |
| Osa06LNT0338400.1 | 6 | gp6 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0338400.1 | 6 | qRS6-1 | Morphological trait | Shoot/Seedling | RZ667 | RG424 |
| Osa06LNT0338400.1 | 6 | qGY6-1 | Morphological trait | Seed | RZ667 | RG424 |
| Osa06LNT0338400.1 | 6 | qLVBSL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0338400.1 | 6 | qLVBTL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0338400.1 | 6 | qSL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0338400.1 | 6 | qTL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0338400.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0338400.1 | 6 | qHD-6-1 | Physiological trait | Flowering | RG424 | RZ667 |
| Osa06LNT0338400.1 | 6 | qPH2-6-1 | Morphological trait | Dwarf | RG424 | RZ667 |
| Osa06LNT0338400.1 | 6 | qTN2-6-1 | Morphological trait | Culm/leaf | RG424 | RZ667 |
| Osa06LNT0338400.1 | 6 | nan | Physiological trait | Flowering | R2171 | R2123 |
| Osa06LNT0338400.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0338400.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)