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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0338500.1

AAATCTAACAGAGAAAGGGTATGCGCTACAAATTTTGGGCATAAAATAACTTCATTAAATGGTTTAAGGATATCTGACGTAACCCAAATGGGATTTCCTTGTTCGTTGTGACTTTTGTGAGGGCAGCTCCATATCCGGGGAGCAGGGAGGCCTGGCGGAGCGACTCCTCGGCGAAGGCCCGGACGTCGCGGGCGGTGTCGAGCGTCGCCGTCAGGCACTCCACCAGCCACCTCTGGTCGCCGTCCCCCGCGCCCGCCGCCATATCGCCCACCGACCCACCTACCCACCACCGCCTAGGATTCGAGCTCCCTCCTCCCGCGCACGCGCGCGCGCTCCCCTGTTTCGCTGGCTTCCCGCGCAACCTTCACGGGGATGGATTTTGGTTTCGAATGGGGAGGGATCACGCGGCGAGGCGGCGGGATCCGCGCGGGTTTTGGCTAGGGTTTTTATAGGAGATGGGGAAACAAACGAGGTGGTGGCGGCCGAG

Coding Potentia
Explanation CPC Score
noncoding -1.21362
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0338500.1 6 9279050 G A
Osa06LNT0338500.1 6 9279090 C T
Osa06LNT0338500.1 6 9279150 A G
Osa06LNT0338500.1 6 9279792 A G
Osa06LNT0338500.1 6 9279340 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa06LNT0338500.1 DTM_#DNAt_MULE_japo_Os0378 Chr6 - 9279024 9280048 1024
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0338500.1 6 nan Physiological trait Eating quality RG64 R2171
Osa06LNT0338500.1 6 S5 Physiological trait Sterility RG213 C235
Osa06LNT0338500.1 6 qNFGP-6 Physiological trait Source activity RM136 RG456
Osa06LNT0338500.1 6 qSF-6 Physiological trait Source activity RM136 RG456
Osa06LNT0338500.1 6 nan Resistance or Tolerance Blast resistance R2171 RG64
Osa06LNT0338500.1 6 nan Resistance or Tolerance Blast resistance R2171 RG64
Osa06LNT0338500.1 6 gp6 Morphological trait Panicle/flower RZ667 RG424
Osa06LNT0338500.1 6 qRS6-1 Morphological trait Shoot/Seedling RZ667 RG424
Osa06LNT0338500.1 6 qGY6-1 Morphological trait Seed RZ667 RG424
Osa06LNT0338500.1 6 qLVBSL6-1 Morphological trait Panicle/flower RZ667 RG424
Osa06LNT0338500.1 6 qLVBTL6-1 Morphological trait Panicle/flower RZ667 RG424
Osa06LNT0338500.1 6 qSL6-1 Morphological trait Culm/leaf RZ667 RG424
Osa06LNT0338500.1 6 qTL6-1 Morphological trait Culm/leaf RZ667 RG424
Osa06LNT0338500.1 6 nan Physiological trait Eating quality RM253 RM162
Osa06LNT0338500.1 6 qHD-6-1 Physiological trait Flowering RG424 RZ667
Osa06LNT0338500.1 6 qPH2-6-1 Morphological trait Dwarf RG424 RZ667
Osa06LNT0338500.1 6 qTN2-6-1 Morphological trait Culm/leaf RG424 RZ667
Osa06LNT0338500.1 6 nan Physiological trait Flowering R2171 R2123
Osa06LNT0338500.1 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0338500.1 6 asv6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0338500.1 6 sd6 Morphological trait Panicle/flower RG138 RG64
Osa06LNT0338500.1 6 qPHw6-2 Resistance or Tolerance Other soil stress tolerance RG424 RZ667
Osa06LNT0338500.1 6 qSFWd6 Resistance or Tolerance Other soil stress tolerance RG424 RZ667
Osa06LNT0338500.1 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
Osa06LNT0338500.1 6 tns6 Morphological trait Panicle/flower RG138 RG64
Osa06LNT0338500.1 6 sd6 Morphological trait Seed RG138 RG64
Osa06LNT0338500.1 6 tns6 Morphological trait Seed RG138 RG64
Osa06LNT0338500.1 6 ph6 Morphological trait Dwarf RZ667 RG653
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus