© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0338900.1
CGAAGAAAACCAATTATTCTTTTTTTTAGTTACTTGCTACTATGCCCCCTGGCTACAGAGTAAGGTATACATTTGCGAACAAGCAAAATTTGTGGTTAACACATACTGCTTTGTAACGACATTAGCATGCAGCTTGAGTTCACTTGCCACTGAAAGAAAAAAAAAAGCTATGGGTGTATGATCTGGCAAGTTTTTTTGTGCTCTATACAACTGCAGAAAATATTTAATAAAAGAATCAAAAATGAAAATTGATGGGAGCCGTGACCGTGATCATGGCAGCAAGATGCCACCTCTTGCTCAAAATGGAGATTCCAGTGGCTGTACCAAGACAGATGATGCATACAAAAAGGTTTCCTGCACCTGTCGACGAGCTGCGTTGTCACACCCCGGATCCTCGGCTCTGATCAGAAACAATTGCTGGCCATGTATGGATTGGCAATTTTGCGCACAGAACAAACATCAACTTCTCATCAAGCTTGATCCTGATCCATGATGAATTTTGTTGTAGATGGATATAAAGGCAAATGCTCTTACTGTTTGCCCGCAGTGTGCAAGTTGTAGTTTGGTTTTGGGAACAGGTGCTCAGTTAATGCCATTCAAGGGGTTCTGCCTCTTTCTTCGTTTTTCCCTTAGGACGACCAAACATTCTCACGTTTTTACCAGTCAAGAGCTTCAGTGCACGCTCGAGGGTAATCTTCTTTGGGTCAGCACTCTTTGGCAAGGAAGCAAGAGTTCTCCTGTGTCTGATACTAAATCCAGCTTTAGAATGTGTGATAAGTACAGGAAGATCATCATCAGGGTGTTTTCCCAGAATTTTGGGATACTGCAATAGCTCGATTGCATCTTTCAGAGTGATAGAGTCAATATCTTTCACCTCAGAAAGAGGAGCTCTTTTCGGTGATACTCCCTTTCTATCCTCTCCAACCTGGACGTAGTGGCCATAAGGACCTTGTTTCAAAAACACCTTTTCATCAGAATCAGGTAGCGCTCCAAGTAACCTAGGTGTGAAAGTCCTTTGAGTTTCATCAGATGCTTCAGTTTCATCGTCATCGTCTGATAACGTGCGAGCAATGTACTTGCATTTCGGATGTCGATCACAGCCTATGAAATAGCCCTCACCATACCTACTAACTTTGAATCTTAGGGTTCCTTCAGAACAACTAGGGCATATCCTACTATCATTGTCTAGGTCAGAAAAGAGGATGGAACCGAATTTTTCTTCAAGCATTCTTTCTACCTTTCTGACGTCAAGGCGACTAGCATCGCCGCAATATTTATTGAATCGTTCCCAAAAGTCTTTCAGAAGGCCCTTCCATTCAGTTGATCCAGCAGAGACATTATCTAGCTCAGTCTCCATGTTAGCAGTAAAGCTGAGATCTGCAACTTCAGAGAAATGATGCATAAGAAACGCCGAGACCATCCGACCACGAAATTCAGGGTGTAGAACCCGACTTTTTATTGTCACATATTTACGATCCTGCAATACTTTCATTATAGATGCATATGTGGATGGCCTTCCAATTCCAAGTTCTTCTAGCTTTTTAATCAATGCACTCTCAGAATAACGTGATGGAGGTTTAGTAAAGTGCTGTGAAAGATGAACGTTAACTGGAGACACCAAGTCCTTAACCTCTAATTTGGACAAGGCCTCAAAGTTATCCTGGTGAACAGCATCAACCTCAGAATTGTAACTGGAAGGACTTGCTTCAGTGTCATCATATACAGCTTGGTATCCCTTGAAGTCAAGCCTTGATGCAGATGAATGAAAAATCATGTCTCCTTCAGAATTACCAATATCAACTTGAATCATATCAGTTCTAGAAGCTTCCATCTGGCAAGCCATAGTTCTTTTCCATATTAGAGTATACAGTTTCAAAGAATCATCATCAAGTGCTCCGACCAAAGATGATGGCAACCTCCTTATGCTGGTCGGCCTTATGGCTTCATGCGCTTCTTGAGCATTTTTCACCTTCTTGAAGTATTTTCTAATGCCCTCTGAAGCATATTCCTCACCATACCTTTGCTTCACTAATGAAAGAATATCTTCTGCAGCTCCATCAGATATATGAAAACCATCTGTTCGGATGTATGTAATTAACCCAGTTGCTTCCTCAGAGGAAAGGTTAATCCCCTCATAGAGCTTTTGGGCTACCTTCATGGTATACCCAGCACTAAAATGTAGTTTGTTTGCTGCGTCCTGCTGAAGGCTGGATGTTATATATGGCATAGGAGGATTCTTGTTAATTTTACTTCTCTTAATTCCTGTTACTTCAAATTGGGATGAATAAATCCTCTTTTCTATATTGTGTGCTTCTTCTTGAGAGCGTATAGAAAGCTGATCCAACTTTTTTGAATTAAGATGCTTTATCCGGGATTGAAGGTTAAGGCCATTTGAAGGGCCAGAATGTTGGGTTTTGAAGTCCGTATCAACAGTCCAGTACTCCTGCGGATCAAACTGTTCTATTTCAGCCTCTCGATCACACACAAGAGCCAATGCCGCAGATTGGACTCGTCCAGCTGACTGGCAACCAGGTAGCTTCCTCCATAACAGTGGTGATATGCCAAACCCAATCAAATAATCAAGGGAACGGCGTGCTAGATAGGCATTCACTAGGTCCATATCAATATATCTTGGAGATATTAAAGCCTTTTTAACAGCATCCTCTGTTATTTCATGAAAGACAACTCTTGCAACAGTAACTTTTGAACCCAATGCGTCTTGCTGTTCGAGCATTTCTTTGATGTGCCAAGCAATTGCTTCACCTTCACGGTCAGGATCAGACGCAAGAATCAAATTTTCTGCCCCTTTTAACGCCGTTCTTATGCTCTTAAGATGTGTCCAGGCAGCAGCAGGAACCTCCCACACCATACTGAAGTCATCATCAGGACGAACAGATTTTGATCTTCCAGCTAAATCTCTCACATGGCCATAACTAGGTAACACTTCATACATGTCCCCGAGGTATTTTTGAATTACTTTTGCTTTTGTTACTGATTCAACAACAAGAACTGATTTAGCTGTGGGAGGGTAAAGAGGAACAAGTGGCTTCTGCTCACTAACAGAGGTCATCGTACAAATCTCAGCTTTAGCTGTCGCGTTAGAAGCAGCAGATTCCTTCGCTTTTGAAGATTTCTTCGACCTGCTTGATGTCTTCTTCTCTTTAGAACTATCGGCAGCCTTTTTTGATTTGGAAATGTCAGACTTGCTTTCTTCTTGGTTGACCCCAATTTTCCTGCTCTTTGTTGCTGCTGTACTAGTTTTAACAGATTTCCTCTGTTTCTTAGTAGATGCCTTCTCTTCTTTCATATCTTCACTAGCTTCCTTTTTTCTGCTTGTTGGACTTTTCCTCCGGGTAGTAGTCTTTTTAGTACCAGTACCACTCTTACTGCGTTTGCTAGTTGATGTTGAAGCCTCATCAGTGATGGTGCCACAAGCAGCCAATGTGCTTTTCCTTTTCTCAGATCTATGAAACATACTGTGTGCAACACTCCCATCTTCCTTTCGCATATTTGGATTACCAAATAAGCACTTGTTTCTGATGGGAAAAGTTACCTTTGTGTTGCGCAGGGTCAAAAAGGACCGTGAATTACGAATATTGTTCGCCCTCAAAGAAATCCCATGCCTATATGCAGCTCTCAGACTTACAAAATTAGGATTGCCCATGAGCCCAGTAGTAAAAAAGGCACCACTTTTGAGCTGCAGGGGAAGACGGGAGCCGATTGAAGACAGCTGCCTTGATGAATTATTACTTAATGAATAAGGCATAAAGTTGTAAGAACATCTCTGAGATACACCAAATTGAAGCATGGCCGTAGGCGCCCCCGGCGGCGGCGGCAGGGCGAGGGAGGCGGCGTGGCCGGCGTAGCGGTGCGGGATGAGGCGGCGGAGCTGGAGCGCCATCGGGAGGGGAGGAGAGAGCGAGAGGCGGAGGCGCGGCCGCGGGCGCACGCACTCAGGCGAGGGGGGTGGCTTGGGCTAATCGACTAATGGCT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0338900.1 | 6 | 9843705 | A | G |
| Osa06LNT0338900.1 | 6 | 9840913 | A | C |
| Osa06LNT0338900.1 | 6 | 9840924 | T | A |
| Osa06LNT0338900.1 | 6 | 9841120 | T | C |
| Osa06LNT0338900.1 | 6 | 9842295 | T | C |
| Osa06LNT0338900.1 | 6 | 9842930 | C | T |
| Osa06LNT0338900.1 | 6 | 9843289 | G | A |
| Osa06LNT0338900.1 | 6 | 9843326 | A | G |
| Osa06LNT0338900.1 | 6 | 9843619 | A | G |
| Osa06LNT0338900.1 | 6 | 9843722 | T | G |
| Osa06LNT0338900.1 | 6 | 9843850 | A | G |
| Osa06LNT0338900.1 | 6 | 9844420 | G | C |
| Osa06LNT0338900.1 | 6 | 9845163 | A | G |
| Osa06LNT0338900.1 | 6 | 9845795 | T | A |
| Osa06LNT0338900.1 | 6 | 9845850 | C | G |
| Osa06LNT0338900.1 | 6 | 9846416 | C | G |
| Osa06LNT0338900.1 | 6 | 9846618 | T | C |
| Osa06LNT0338900.1 | 6 | 9846789 | C | A |
| Osa06LNT0338900.1 | 6 | 9857061 | G | C |
| Osa06LNT0338900.1 | 6 | 9847571 | A | G |
| Osa06LNT0338900.1 | 6 | 9847613 | T | A |
| Osa06LNT0338900.1 | 6 | 9848204 | T | C |
| Osa06LNT0338900.1 | 6 | 9849579 | A | G |
| Osa06LNT0338900.1 | 6 | 9850655 | A | T |
| Osa06LNT0338900.1 | 6 | 9851304 | C | T |
| Osa06LNT0338900.1 | 6 | 9851994 | A | G |
| Osa06LNT0338900.1 | 6 | 9852926 | T | C |
| Osa06LNT0338900.1 | 6 | 9853187 | C | T |
| Osa06LNT0338900.1 | 6 | 9853328 | A | G |
| Osa06LNT0338900.1 | 6 | 9854015 | A | G |
| Osa06LNT0338900.1 | 6 | 9855203 | G | A |
| Osa06LNT0338900.1 | 6 | 9855678 | G | T |
| Osa06LNT0338900.1 | 6 | 9856485 | G | C |
| Osa06LNT0338900.1 | 6 | 9856496 | T | C |
| Osa06LNT0338900.1 | 6 | 9856934 | C | T |
| Osa06LNT0338900.1 | 6 | 9850236 | G | A |
| Osa06LNT0338900.1 | 6 | 9851570 | A | G |
| Osa06LNT0338900.1 | 6 | 9851726 | A | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0338900.1 | osa-miR5827 | Cleavage | 4.5 | 15.14 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR7695-5p | Cleavage | 3.5 | 17.366 | 1 | 24 |
| Osa06LNT0338900.1 | osa-miR395b | Cleavage | 4.5 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395d | Cleavage | 4.5 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395e | Cleavage | 4.5 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395g | Cleavage | 4.5 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395h | Cleavage | 4.5 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395i | Cleavage | 4.5 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395j | Cleavage | 4.5 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395k | Cleavage | 4.5 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395l | Cleavage | 4.5 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395s | Cleavage | 4.5 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395t | Cleavage | 4.0 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395c | Cleavage | 4.5 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395u | Cleavage | 5.0 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR399i | Cleavage | 4.0 | 22.457 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395m | Cleavage | 4.5 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395n | Cleavage | 4.5 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395o | Cleavage | 4.5 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395p | Cleavage | 4.5 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395q | Cleavage | 4.5 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395v | Cleavage | 4.0 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR395r | Cleavage | 4.5 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR1426 | Cleavage | 4.5 | 19.119 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR810b.2 | Cleavage | 4.5 | 10.674 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR1866-5p | Translation | 4.5 | 10.933 | 1 | 24 |
| Osa06LNT0338900.1 | osa-miR2094-5p | Translation | 4.5 | 9.473 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR2096-3p | Cleavage | 4.0 | 18.708 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR2872 | Cleavage | 4.5 | 18.105 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR2928 | Translation | 5.0 | 18.085 | 1 | 20 |
| Osa06LNT0338900.1 | osa-miR395y | Cleavage | 4.5 | 20.265 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR5519 | Cleavage | 5.0 | 15.37 | 1 | 21 |
| Osa06LNT0338900.1 | osa-miR5523 | Translation | 4.0 | 18.091 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0338900.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0338900.1 | 6 | qNFGP-6 | Physiological trait | Source activity | RM136 | RG456 |
| Osa06LNT0338900.1 | 6 | qSF-6 | Physiological trait | Source activity | RM136 | RG456 |
| Osa06LNT0338900.1 | 6 | gp6 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0338900.1 | 6 | qRS6-1 | Morphological trait | Shoot/Seedling | RZ667 | RG424 |
| Osa06LNT0338900.1 | 6 | qGY6-1 | Morphological trait | Seed | RZ667 | RG424 |
| Osa06LNT0338900.1 | 6 | qLVBSL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0338900.1 | 6 | qLVBTL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0338900.1 | 6 | qSL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0338900.1 | 6 | qTL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0338900.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0338900.1 | 6 | qHD-6-1 | Physiological trait | Flowering | RG424 | RZ667 |
| Osa06LNT0338900.1 | 6 | qPH2-6-1 | Morphological trait | Dwarf | RG424 | RZ667 |
| Osa06LNT0338900.1 | 6 | qTN2-6-1 | Morphological trait | Culm/leaf | RG424 | RZ667 |
| Osa06LNT0338900.1 | 6 | nan | Physiological trait | Flowering | R2171 | R2123 |
| Osa06LNT0338900.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0338900.1 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0338900.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0338900.1 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0338900.1 | 6 | qSFWd6 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0338900.1 | 6 | qPHw6-2 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0338900.1 | 6 | Pi-2(t) | Resistance or Tolerance | Blast resistance | nan | nan |
| Osa06LNT0338900.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0338900.1 | 6 | gw-6 | Morphological trait | Seed | C235 | G294 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)