© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0339200.1
AACCTTCAAACTTGTTGTTTAAGTGGCAGTGTGTTTACTCTTGAAGGATGTTCATGATGCTTCTCATAGGAATTCTTACTTATCTTCCTTGATCTCAGACATTTCGCGATGCTACTTGCTAAAATGGTCACCAACAGAAGGTATATTGTGACACCGATTACTAGACCATAGACATAAACTGAGGTCCTGAATTTCCTGCAGCTTCCCGCAGCGAAAGCCGTCATGAGAGCCAGCAAATCTAGTATCATGATCAAGTGCAATACCCCAAGTGGTACATTCTTCTCCCTGACAGATTTGCTCAGCAGAAGCATGATCACAACAATGGATGACATGAAGGAGAATGCATTGAAGCAGAAGAATGCTTTGTAGCGATGGGGATGAATATTATGAAGGACTGGGTCGCCAGCCTTGTGTTTTGGGGGATCTGAACTGTCATCCGACCAGAAGCCACCAGGTGGGTTCAGACCAGCTTGGTATGTGATGGAGGCCGCCAAAATTGAAAGCAACATCAGATACTTGTGTCTTTTTCTTTCACTTTTGTCACCAGGATCTGGACTTCCTTGGATCTCAGAACCAATATCTTGCCTAACCTCCTTAGTCTGAAAAATCCACTCAAGCAAACTTTCCATACACTTGCACAATGGCTTTCCTAGTTTATCATATGTTGAAGACATAATGAAGACTTGAATCATAAGGGAGATCAGAACTGCAACAGCAACGATGATGAGATAAATAGATTGTTTTGCTTTCCTGCAGCTTCCTGCAGCATAAGCAATCAAGAGGCCAACCAATCCTGCTGCCAAACACACTCGCAATGCATAGAACTTCATACCATGCTCACAGGATCCCTTGTTCACGAGTAGTATTGTGATGACAACAGATGACACGAATGAGACTGAATTTGAGTAGTAGAACACATTATAGCGTCTTAAATTGTTCTCCTGAAGGACTGGGTTGCCTGTAAGGGTGCGGTTGATATCCTTGTCATCAGACCATACACTTCCTGGAGGGTTCATGCCAGCTTGGTATGTGACAGTCGCAGCGAGAATAGAAAGAATCAATAGTAGATTGCGCCTTCGCTCCCAATCCTTCTCATTGCCATGCCCTGTCTGGTTGCTGCCATGGAGAGGCGACCACAAATGTCTGCACGAGAGGCGGTTTAGCTTTTCTGCCACCTGCCTTTTCCAACCTTCTGGGATTACATGAATTGCTATCAAAACATGAATACCAACATAAGCAAGCACGAGGAGTACCATCACTGAGATATAAACTGAATTCTTTGTCTTCCTACAGCTTCCCATAACATAAGCCCCTGTTAAGGACAGGAGGATCACTATCATTGCTATCTGCAGTGCACGCCGTTTTATAACCTTGTTGGCCATTCTTCTGTTCAGGAGCATAATGATCATGACAACGGATGCAACAAAGGCAATTGCATTTAGATAGAAGAATGCAATATAGCGAGGGTGGTGAGTGTCCTCAAGGATGTGATCACCAGATGAATGATAATCCTCGTGTCTTGTCCAGAAGCCGCCTGGTGGATTCAGACCTGATTGGTATGTCAGAGATACTGCAAGAATCGCAAGGAGGAGTAGATATGTGCGGCACTTCTTCAGATGCTTAGCAGTTTGATTTCTATTGCCATCTTCATTGGGAGATCTTTCATTCTTGTCAATATAGCCATTCTCAACATGTGGAGCAATTTTATTATCTTCAGCAATTTCAATCTCACTATGTCCCACAGGCACATTAGGAGATACTTTCTCTTCTGGTGTAACAACAGTCCCAGGTTCATCAGTCGACGAAGATTGTTCCATTTTATTTATAACATGCTGGCTGTCTGTAGATCGATTGTCAGGGTCAGGCATACTGCCTTCAGTATCTGTAGTCTTTAAGTCGTTAGTCATTGTGGATTGTTCCTTCATATCTGTAACTTGATGGCTATCTGCAGATTGAGGCTCAGGGTCAGAAATACCATCCTTAAGTGTCTTGAAATCATCGATTGATGAAGAATTTTCCTTTGTATTTGCATCTTGCTGATTGTCTGCAGATTGATGCATACCGTCCTTATAGTTTGTAGCATGTTGACTTTTTTCAGATGGGTGCTGTGTGTTGGATATAGATTCCTCTGCGGTTGGTTGGGCTTGGTCGTCTATAGACTGACCCTGCAGGTTGTACACAACATCTGTGCTACACATAGATTGCTGATAACCGGCCGATGGATGGTCAGAGTCAGGCTCAGCCTCCTCGGAATTTGCAGATTGACATTCGCCAGAAGGCTGATTCTTCGCATGTGACTCTCCCTCTTCAATATCTGTACTTTGCAGAGCATTTTCTTTTACTTGTGCATCTGGTTCAAGCTCCGTTTGCAGATGATTTGCTTGAGAATTTTCTTGTTCTCTATCAATTGATCTGTTTCTCTTAAAATCCAATGAAAAAACCCGGCCAATTGTACCAATGCATGTCAGAGTGTCTGGTTTGATCTTTTGTAGCCAATCTGCGACAGGTTTGTAAACCAAGATTCCAGCCAAAACCACAAAGCAGGTCAAGACTATGATGGAAACAGACATAACATAGAAAGAAACTGCTATATCTCTACAGCTTCCTGCAGCATACGCACCTATCAGGCCCAATAGGTCAGCTACCACACACACAATAACTGCTTTAGATCTTATTCCATGCATGCTCAATTCTGGGCTAAGAAGCAACATGATTGTGACCAAAGATGCCACAAATGAAGTTGCATTGCAACTCATGAAAAAATTATACCGAAGAAGATAGTTACTCCGAAGAATAGGGGTTGCTGGATGACTGCTGCCTTCAGTCCAAAAACCACCTGGTGGACTTAATCCTGCTTGGTAAGTGATAGTTGCAGAAAAAGTTGCAAGTGTCAAAATGAACTTGCGAGCCTCCTCAATGTTTCTTTTTTGATCGTTGCTCCTGTTCTCCTCATGTACACCCCACTTTGCTTGAATTTTCTGTAGCAGCATTTGTACTCTCTCTTTCAACCATTTTGGAAATATCCTTGTGCATAACAAAATGTGAATTCCAACATATATGAAAACAGCAACAACTAGGACCCATATATAAATGGAAGACTTTACTGCCCTGCAGCTTCCAGCAGCATAGGCTCCCATCAAGCTGAATAGGTCTAATATCATGGTAAATTGCATTGAACGGAGCCACAAATTCTGCCTCGTCACACTCTTACTTAGAAGCAATATGATTAAGACAAGAGATGCAGCAAAGGCTGTTGCATTGCAGTAAAAGAATACCTCATACCGTGGGAAGAAGTAAACACGAAGGAGAGGTTCACCAGCATCACGTCCATTAGTCGTGTTTTTTGTCCGAAATCCACCCGGTGGGGTTAATCCAGCATTATATGTCACACTGACTGCTAAGATTGCAAGCATTACAAGGTACTTCCGCAGTCTCCACAAGAGCTCAAAATCAACTGTGATGCTGGGTGCATGGCTACTGGCCAATAAAAACCTACTGGACAAACCATTCATGGAGTCTTGCCTGTCGCTGCCAGTTTCCATGCCATACTCTGCCCTATCCCCATTGGTGTTGTTTTCTTCACTCTGTCCATTGACTGGTATTAGGACATCTGTGGTATTGGTCAGAGCAATGGTGAGCTTGGGTTGCCTTCCATTTTCCATGTGGTTCCTCAATATCTGAGATTGCGAGTCTGAGGAGCAGTAGGTAAGACTTCCCTTGATGATATAATATACGTTTATAAGATACAATAGAAGATAGCTTGCTTGCTTGACCCCACAATGATAACCGCCATATGAATTATTAGCTCTATGTGTATAGAGTTGTATTAACTTGCTCTATGTGTATAGAGTTGTATGAACTTGCTCCCATCCAATTATGAGTGCATAATAGGTTCCTGACATGGAAATGCACTCTGTGCTAACATAATCACATTGAGAGGCCAACCCCATCGGCCATATGCTCATTTCCTAGCTGATATTGCATGTTTGCAGTCAGAACATGGATGACTCTGCTGCTCAAACTGGTAAGCAATTGTAAGGATAGTCCAGTTGTTGAAGCCCTAATGGCAGTGTGAACGCACATGTTTCCTAAAAAAAAAACAGTGAGAGAACATACAAAGGAGGAGCAAACAAAGAGGGGGAGAAGACCTGGTGAAGTCAACATACCAAAGGACAGCAGCAGAAAAAGGGCGGGGCCATCTTGCAATAACCACGCACATAAATAACACTACCAGCTCGTGCTCAATAACTCGCTAAGAAATCGAGTGCAGCTGAAACAGCCAATATGTTGAAAAGATGCATCTAATCGAATCAGACATAATCGGCGTACATGTTATTTTACAAGGAATATGGCCACCTTGCAGTTAGAACATCCAAACAACTAAAAGATAGTAGTGGTGGGGATTCCCGACTTTTAATATGACAACGAGATGGATTGTATCTTCTGCACTCAGATGCCACTGCTAGCTGCTGACAATGATTGACTTTGGAACACGCAGGTAAGCAAAGCAATGCCAGTAACAAAATTAAGTACCTGGGAGCTCGTAGGCAGTAGCAGGGTAACTGCAGTGGCGAAATGGAATCCGTAGGCTGCGATTAAGTTAACGCAGAATTGCGGACTCGTTGACATCTCTAGACTTCCCACACGGTTTCCACACTATTTTCACATCACCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGTACCCAAGAAACCAAAGAAAACGACGGTCGTCTCGTCTCGTCTCGAGTCTCGACGCGCCTGAGAAATGGTCAGGGCTTCCGCGGAGCACTTGCTTCGCTCCTACTACTCTACTAGTCGTTACTGCCACGACCGCAAACAAACGCGCCGAGCTCCCGGAGCCGGAGCAAACCGGCGCCCGGAACGGCTCCTCCCGCTAAGGCATTTGTTCGAACACCTTGCGGGCGTGGACTGCGGGGGCGACCCCCTCGTCCCCGCCTTTGGCGTTCCGTCGAACAGGCGGGCGGGGGTGGGCGGCGTGAGTTGGGGCAGTCTCGTGCCCGGTCGGCATCGATCTGTGGACCCATCCTCGCCGGCCGCCGGGGTCGTCGTCGACTGGTCCGCCGCCTTGATGAGCAATCGCTGCAGTAAACAAAAGACCCAATTCGCGTCGTCGTCGTTGTCTCGTCTCGTCACAGGGCTGAGTGGTGGGT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0339200.1 | 6 | 10738720 | C | T |
| Osa06LNT0339200.1 | 6 | 10740957 | A | G |
| Osa06LNT0339200.1 | 6 | 10740975 | T | C |
| Osa06LNT0339200.1 | 6 | 10741778 | C | T |
| Osa06LNT0339200.1 | 6 | 10742085 | G | T |
| Osa06LNT0339200.1 | 6 | 10742709 | A | G |
| Osa06LNT0339200.1 | 6 | 10742748 | C | A |
| Osa06LNT0339200.1 | 6 | 10743006 | G | A |
| Osa06LNT0339200.1 | 6 | 10743204 | G | A |
| Osa06LNT0339200.1 | 6 | 10743980 | A | G |
| Osa06LNT0339200.1 | 6 | 10743991 | A | G |
| Osa06LNT0339200.1 | 6 | 10742022 | T | C |
| Osa06LNT0339200.1 | 6 | 10739272 | T | C |
| Osa06LNT0339200.1 | 6 | 10739559 | A | G |
| Osa06LNT0339200.1 | 6 | 10739682 | C | T |
| Osa06LNT0339200.1 | 6 | 10740662 | T | C |
| Osa06LNT0339200.1 | 6 | 10740749 | T | C |
| Osa06LNT0339200.1 | 6 | 10740899 | T | C |
| Osa06LNT0339200.1 | 6 | 10743176 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0339200.1 | osa-miR5796 | Translation | 5.0 | 17.977 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR5804 | Translation | 4.0 | 14.694 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR156k | Translation | 3.5 | 19.127 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR159a.1 | Cleavage | 3.5 | 23.275 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR159a.1 | Translation | 5.0 | 16.501 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR159b | Cleavage | 3.5 | 23.275 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR159b | Translation | 5.0 | 16.501 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR159c | Cleavage | 4.5 | 23.275 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR159d | Cleavage | 4.5 | 23.275 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR159e | Cleavage | 4.5 | 23.275 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR159f | Cleavage | 4.5 | 23.275 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR319a-5p | Translation | 5.0 | 20.35 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR319a-3p.2-3p | Cleavage | 5.0 | 22.354 | 1 | 20 |
| Osa06LNT0339200.1 | osa-miR319b | Cleavage | 5.0 | 22.354 | 1 | 20 |
| Osa06LNT0339200.1 | osa-miR166g-5p | Translation | 4.0 | 20.314 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR408-5p | Translation | 5.0 | 15.226 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR408-5p | Cleavage | 5.0 | 22.879 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR417 | Cleavage | 4.5 | 9.001 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR435 | Cleavage | 5.0 | 24.517 | 1 | 20 |
| Osa06LNT0339200.1 | osa-miR444a-5p | Cleavage | 5.0 | 18.217 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR1847.1 | Translation | 4.0 | 15.297 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR1849 | Translation | 4.0 | 24.154 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR1865-5p | Cleavage | 4.0 | 22.447 | 1 | 24 |
| Osa06LNT0339200.1 | osa-miR1870-5p | Cleavage | 5.0 | 13.801 | 1 | 24 |
| Osa06LNT0339200.1 | osa-miR1883a | Cleavage | 3.5 | 18.627 | 1 | 24 |
| Osa06LNT0339200.1 | osa-miR1883b | Cleavage | 3.5 | 18.627 | 1 | 24 |
| Osa06LNT0339200.1 | osa-miR2095-3p | Cleavage | 5.0 | 14.881 | 1 | 20 |
| Osa06LNT0339200.1 | osa-miR2864.2 | Translation | 5.0 | 11.965 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR2929 | Cleavage | 4.5 | 11.719 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR5080 | Translation | 5.0 | 17.7 | 1 | 21 |
| Osa06LNT0339200.1 | osa-miR5083 | Translation | 5.0 | 14.755 | 1 | 20 |
| Osa06LNT0339200.1 | osa-miR5515 | Translation | 5.0 | 19.147 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0339200.1 | 6 | gp6 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0339200.1 | 6 | qRS6-1 | Morphological trait | Shoot/Seedling | RZ667 | RG424 |
| Osa06LNT0339200.1 | 6 | qGY6-1 | Morphological trait | Seed | RZ667 | RG424 |
| Osa06LNT0339200.1 | 6 | qLVBSL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0339200.1 | 6 | qLVBTL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0339200.1 | 6 | qSL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0339200.1 | 6 | qTL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0339200.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0339200.1 | 6 | qHD-6-1 | Physiological trait | Flowering | RG424 | RZ667 |
| Osa06LNT0339200.1 | 6 | qPH2-6-1 | Morphological trait | Dwarf | RG424 | RZ667 |
| Osa06LNT0339200.1 | 6 | qTN2-6-1 | Morphological trait | Culm/leaf | RG424 | RZ667 |
| Osa06LNT0339200.1 | 6 | nan | Physiological trait | Flowering | R2171 | R2123 |
| Osa06LNT0339200.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0339200.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0339200.1 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0339200.1 | 6 | qPHw6-2 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0339200.1 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0339200.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0339200.1 | 6 | Pi-2(t) | Resistance or Tolerance | Blast resistance | nan | nan |
| Osa06LNT0339200.1 | 6 | qSFWd6 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0339200.1 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0339200.1 | 6 | gw-6 | Morphological trait | Seed | C235 | G294 |
| Osa06LNT0339200.1 | 6 | qNFGP-6 | Physiological trait | Source activity | RM136 | RG456 |
| Osa06LNT0339200.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0339200.1 | 6 | qSF-6 | Physiological trait | Source activity | RM136 | RG456 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)