© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0339600.1
GTTTGCTCACATAATTGTTTATACAATCATGTACACTTACAGAAAAGTAGCAATGACAGAGGACAATGGATCTTACATGATGTGGGCTAGGTTAGAAAAAACAGCAATCATTAGGGGATTTGGGACAACATTTTCTCATAGATATCTTCGTCATGAACTAATTGAATCTTTTCTCATCTATAGCACTGCAGTACAGAGAACAATTTAGTGCTTTAGCTCAATAAAAACAACAGTACATCACATCATGTACTTACAACAGATTAGTAGATGAGTGGTACCTCCTTTGCATAATGGCACAGAATTTTGAAGTATCCCCTACAGAATACAGGGCATGTTTGGATGTCATCCATATATTGCTACACAATGAATATATGGCAGGTAGGACAAATACTCGTCTAAGAAACTGTGTTGAAATATCTCCGTGGCTTTGGATAAGGGGCAAACATAATATTTCATGAATTAAAAGAAGTAATAAAATCATATTTTGAAGTCAGCATATAATGAAAACTATACAAGTGTATTTGTAAAGCAAAAATTCAATCTGGAAGGATGGGTCATTAGAAAATTCCAATACAGTGCAGCGCTGCAAAAAAAAAAAGAAAGAAAGTAGGAATAATGCTTGTCAAGAAAAAATTACACCCCAGTGTGGCAGTGTGCCCTATTGGAACATATGACATGTCTCATCTAAAATTGTTTGAAGTGCATGTCACTTCGTCACACACCAATAAATTGAAACAATACTTTATGATCAAAGCAGAAAAGAGAATAACACAGTATAGCTAGAGATACTAAGGATTGGATTCTTTGGAATAGCACATATGTACAGTTAATCGGTATGGACTACACAGATCAACAGAGGATGGTACTATGCAGGTTAGAACTTAGAAGTATCTGTGGCTTTAATCCTCTCAAGCAACCATGGTTTCAGTGTTACTGAAACACCCTGCAAACAATGCTAACCTATGAAATCAATGTTCCATTACATATTAAATAATAGTAGCAGATATAGAAATGGGTATAGCACAAGAAAAATGTTAGCTTGTTATACATAGGACCTGAACTGATTTTAAAATGTAGTAATTAGGGTCTAGTAAAGTTCTTAAAAATACTGAAATCCTCAATCAAGCCAAATAAATATTTGTTTGCTAGATGTACAATATAATTTGTGATTACTGCCTTGACTTATAGACCTAATATTGACCCAATGTAGAGGTTACAATATGATTCGTAGAATAATGGAGCTTACACCATATAGGAGGCTAAAAGACTTGCACCATGAAATCAAATCATTACCTTAATATCAGCACAATCATCTGTCTATATTGAGCCCTAAAGACCCTGAGGTTTATCTCATAGAAAATTAACTGCAGGATCCAAATATAAGGGTAATATGCCCAGATTGTCAGGCTTACAGAGAATTTCTGATGATGTATGCATCACAATGGCCAATATAAGATTGTCGACAAAGAATATCATCAATGCAAATGTGTGTAGTGCCATTCTGCGTACAGAATTAGTGCACGACGAATTAACAAATAAAATATGATTTGTTGGACAGGAAGGAAATTGAGGCAAAACCTTCTGATAGCATAAACAAGATATGCTATCATGGACTAAACCTAAATAATCTGATAAGAAATATGAAGACCACATATATCACCCAAAGAAGACAATAAGAAAACATCCAACCTAAAAACAGAAGCATAGAAAGGTGGCAGCAAGAAAACTTACTGACATGCAGAAAACTTACTGACATGCTCACTATATTACCAGTATTGTACAATGAAGGAACACAGACATTACTTCAGAATTCACTCATTAACATGTTATGGGCAGAACTCAGCACATTCAGTCAATTTGTTAGGCTTTATTAGATAAGGTTGTTAGGAGGTTTGTTAGGAGCCGACTCTATTTAAGGAGAGGCACCGCAGTCATTTGGAATGAATCAAGAAAGAAGTTAACCTATCTCTTGTCTCCCCTCCTCTTCTGTTCGTCCTCACCCAAGCTCCGGAGCAGCGAGGCTGCAGGCCTCGCCCTCCCATCGAGCACCCCAATTCATCTACCCACATAACATCTTAGTAGCTGCTAGGTGGCAACATATCCTATGCACACAGGCCCTCACGTGTACACACGTGCACACCAACTAAAAAATGTCACCAAAAATTCTAGAAAAAATCATACACATACTTTCAGTTGTATTACACCTAGGGTTAAAATCTTAACGTCAAATTCATTATATTTTAGCCGTAACAAAAAAAAACAAAAAATCTGACAGTTTTAAGGTTACAATTTTGTCAGAATTTTATCTTTTTTGTTATTCTCTATGTAGAATGAATTTGAAGATGCGACTTTGCACGTAGATGTAATACTATTGAAAGTACATGTATGAATTTTCCTAGAATTTTTTGTGATAATTTTTAGTTGGTGTACACGGTGTACACGCGAGGGCCTGTGTGCATAGGATACGCTCCCCTGCTAGGTGGAGATACTGTACGCAATTTCCATCCGGGCCAATAGATGTTTCAGCTTTCAAGTGGACATGTGGCACGTTAATTACTGCTGCACACGCACGCACGAGGAAGTGCTACGAAGTTACGAAAGGTATTTATACCACTTACACAGGCAACACAAGGGAATCGGGAATAAAGATGCAGGTGAAACGAGATGCATATGTCTCGGTCAGGATAGGCACAGGGAGGTCTTCTATTTGGCCAGTTGCTGGTTCAGCTTGCCGACGAGCTGCCCGTTGGTGTACAGGTACTCCTGGAAAGACATCCGGAGGCTCCGGAGCACAGCCGCTTCGCTGCTGTTGGAGGTCGCGTTGAACAGTGTGCAGAAGAGGTTTTTCCACAGCTCCACGTTCCAGTACCTAATTCAGTGACTTTGTTTCTTAAAACATTCTGAGGCGAAGTTAATGGCACCTTTCCATGATAGACCTTGTTGCTCTGATGATAGCCAGCGAACTTCTTCAGGTCAACATTAATGTTCTCCAATAAATTATTCATAGTAGACTCAGACCATGGATCCAGCAAAATAGGTTCTTTCTTTTGCATTTTGGATGGTTTCGGCTGGGCATCGGCATCAGCTTCTTCTACAATCTTCTCCAAGTGTTTTAAAAATATTGTATGTGTCTTCTTCAAATGATCAAGTGGCTCGGCTTTTCTGGTACCACAGAAATGGTTTGCGATCACATCAACATGGCAAATTTGACATCAGGTTATTGCTGCCCAAAAAGTTCACTTCAACAAAAACATAATGCATCCGCATAGAGGATCCAGATCTTGAGGAGTCGGGGGTCTGTGGAGTACTGGTAATCGTCACCATACTTATCAATGCATTCCATTACACAAATCTTGAGCCAATCAAGGGCTGCTGCTTCAAATTTTGGGCCTCTCCTGAGCTCATCCATAGCCTTGTTGATAGACCTGAAGGTAGGGGAGGATGGGATCGAGGGGAGGGGGTGGCACCTCCCTCCGAACCCTAGGCGACGGCCTCCGGAGCGGGCTGGAGGCGGCAGCGGCGGCTGCCTCCGGCACCACCAACGGCGATCGTTCGAGCAGAACCATCTACCGCGGACGCAGGAAGAAACCCTCGGATTCCTGCGGCGATCGCCGGCGGCGAGCTCTCCGCTCCCGTGTGGGGGTGGCGGATGCGTGCTCTGTGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGGGAGAGTGGAGCGGAAGAGGGGAATAATTTGAACGGCGGCGGTACACGGCAGCGGCGGCGGCGGAGGCGGTGGCGGAGGCGACGGGGACGGCGCGAGGGGGAGGCGGAGGGTTTAGGGGGTTTAGTGGATGTTATTCTGCGAAAAAAAAACCCTCCTCTT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0339600.1 | 6 | 11056293 | G | T |
| Osa06LNT0339600.1 | 6 | 11055902 | A | G |
| Osa06LNT0339600.1 | 6 | 11055945 | A | G |
| Osa06LNT0339600.1 | 6 | 11056783 | A | T |
| Osa06LNT0339600.1 | 6 | 11057941 | T | A |
| Osa06LNT0339600.1 | 6 | 11058371 | T | C |
| Osa06LNT0339600.1 | 6 | 11058535 | A | C |
| Osa06LNT0339600.1 | 6 | 11058540 | G | T |
| Osa06LNT0339600.1 | 6 | 11059091 | A | G |
| Osa06LNT0339600.1 | 6 | 11059305 | T | G |
| Osa06LNT0339600.1 | 6 | 11059451 | T | G |
| Osa06LNT0339600.1 | 6 | 11060121 | C | T |
| Osa06LNT0339600.1 | 6 | 11060209 | G | A |
| Osa06LNT0339600.1 | 6 | 11060446 | G | A |
| Osa06LNT0339600.1 | 6 | 11060565 | C | G |
| Osa06LNT0339600.1 | 6 | 11061246 | T | C |
| Osa06LNT0339600.1 | 6 | 11061790 | A | C |
| Osa06LNT0339600.1 | 6 | 11061846 | A | G |
| Osa06LNT0339600.1 | 6 | 11061937 | T | G |
| Osa06LNT0339600.1 | 6 | 11061958 | C | T |
| Osa06LNT0339600.1 | 6 | 11062307 | C | A |
| Osa06LNT0339600.1 | 6 | 11062377 | T | A |
| Osa06LNT0339600.1 | 6 | 11062619 | C | G |
| Osa06LNT0339600.1 | 6 | 11062637 | A | G |
| Osa06LNT0339600.1 | 6 | 11062691 | T | C |
| Osa06LNT0339600.1 | 6 | 11058606 | A | G |
| Osa06LNT0339600.1 | 6 | 11063985 | T | G |
| Osa06LNT0339600.1 | 6 | 11058024 | A | T |
| Osa06LNT0339600.1 | 6 | 11063965 | A | T |
| Osa06LNT0339600.1 | 6 | 11064024 | G | A |
| Osa06LNT0339600.1 | 6 | 11064505 | T | C |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa06LNT0339600.1 | DTM_#DNAt_MULE_japo_Os0098 | Chr6 | - | 11057952 | 11058332 | 380 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0339600.1 | osa-miR395u | Cleavage | 5.0 | 8.729 | 1 | 21 |
| Osa06LNT0339600.1 | osa-miR417 | Cleavage | 4.5 | 12.452 | 1 | 21 |
| Osa06LNT0339600.1 | osa-miR1425-5p | Cleavage | 4.0 | 14.099 | 1 | 21 |
| Osa06LNT0339600.1 | osa-miR1425-3p | Cleavage | 4.5 | 12.409 | 1 | 21 |
| Osa06LNT0339600.1 | osa-miR444b.1 | Cleavage | 4.5 | 14.652 | 1 | 21 |
| Osa06LNT0339600.1 | osa-miR444c.1 | Cleavage | 4.5 | 14.652 | 1 | 21 |
| Osa06LNT0339600.1 | osa-miR2919 | Cleavage | 3.0 | 11.816 | 1 | 19 |
| Osa06LNT0339600.1 | osa-miR1853-5p | Cleavage | 5.0 | 17.999 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0339600.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0339600.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0339600.1 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0339600.1 | 6 | qPHw6-2 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0339600.1 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0339600.1 | 6 | Pi-2(t) | Resistance or Tolerance | Blast resistance | nan | nan |
| Osa06LNT0339600.1 | 6 | qSFWd6 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0339600.1 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0339600.1 | 6 | gw-6 | Morphological trait | Seed | C235 | G294 |
| Osa06LNT0339600.1 | 6 | gp6 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0339600.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0339600.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0339600.1 | 6 | qNFGP-6 | Physiological trait | Source activity | RM136 | RG456 |
| Osa06LNT0339600.1 | 6 | qSF-6 | Physiological trait | Source activity | RM136 | RG456 |
| Osa06LNT0339600.1 | 6 | qRS6-1 | Morphological trait | Shoot/Seedling | RZ667 | RG424 |
| Osa06LNT0339600.1 | 6 | qGY6-1 | Morphological trait | Seed | RZ667 | RG424 |
| Osa06LNT0339600.1 | 6 | qLVBSL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0339600.1 | 6 | qLVBTL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0339600.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0339600.1 | 6 | nan | Physiological trait | Flowering | R2171 | R2123 |
| Osa06LNT0339600.1 | 6 | qSL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0339600.1 | 6 | qTL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0339600.1 | 6 | qHD-6-1 | Physiological trait | Flowering | RG424 | RZ667 |
| Osa06LNT0339600.1 | 6 | qPH2-6-1 | Morphological trait | Dwarf | RG424 | RZ667 |
| Osa06LNT0339600.1 | 6 | qTN2-6-1 | Morphological trait | Culm/leaf | RG424 | RZ667 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)