© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0340700.1
GCCCTTTCTTTTTTATTATTTTTCCATTTTCTAAATTTCTTTTACCAATTTCCCCCTTTTTCCCTTGTATGTATAACTATGTTTACCGAAATTTAACCACAGTTTTTGAGCTGTAGAAGATACGGATATTTGGGTCCATATATAAATACAGTGGATAAGAAATGATTCAAAATGTGTATCAAGTGTACGGCATGTTATGGATCCAATTTTAAAAATGTTACAGTTGTACAAATAATAATAATGGTATTTTTTCGAACTAGCAAATTTATAATGGCATGAATCCAATTAATTAACCAGTTCTATTTCCTTGACTCACTCGAGTCTATCGAACCATGGATGGGGAGCTCCTTCCTCTTCTCGATTCCCTTCCTCTCGTTTGATAATAATAACCAACAATTTTGTTCCTTGATAAATATGTAATAATAAACCCGGCTTTTCGATCAATTATCCTGCAGCCTTGTACTTTTGACACTGTAAATCTTGGCCAATAATTTTATCTGTTCTTTACATTGTCCATCAGATTTATCTCTCCACTGAAACTTGATTACTTGATCTCTCCACTACTGATTTATTGGCAAACCTGTTGCGTGATCTTATATAGTTGTCAATAATTAATATCCCTTTTTCTCTTGCTCCATTGTTCACAGAGAGTTTCGTATTACACCCTCCGTCCCACAAAGACTTTACCTTTGAGTTTTATGTCCAATTTTTGACTGCACGTCTTATTTAAAAAAATAAAAAATAAATACACACAAACAAAGTACTATTAATGTTTTATCATCTAATAATAATAAAAGTGCTAACCATATAAAATTTTAAATAAGATGAAGAGTCAAACCTTATATTAAAAAACTAAAAAATAGAGTCTTTGTGAGATGGAAAAAGTAAAAGTTAGTAGTACATTACATAGCAATCCTACCGTAAGGTGCAGGGTATCACCGTATTATCTATCACCCGTCTGTCTCATCACATCGCTCTAGTAAGAGACAAACACAAGAAGGCAAATGGGTGTTGGCCGGACAGCCTAGCTTCCAGAGCCCCTGAACTGATCAAGTGCCGCTCCACTGCTCTGACGAAGTCGTCCATGATTTCATCTGACGCTGCAAAATGCTGCACTATTATTGGCTCAAATACAGCTCTTACGCGCAAGGCTACCATCTTCAGATCGAGCAAGGCTTTGCCCGTGCCGTCATACGGATCGTGCATCATCATCTTGTTGACCTCAAATGAACCCTCCTCCTCTATGATGTTGTTAACTTCACTGTCCATAGGGCAGCACAAGGGAATGTAGAAGGAGTCAAGCTTTTCTTTGCTGATAACACCCCTTAATGCCATGTCACTTAAAGCCGTCACCGCCGGCGTCCATGGTTGAATTAACTCAGTGTCAGGTTTGTCCGAGCGCTTGACCAACAGTGAGACAACCATTCGGCCTCCAGGGACAATCTCCTGTGCCCTCAAGCTCAAGAATCGCATGAAATCCTTCCTAAACTGCCGAGCATAAGAATCCGCGACAATTTGATGCCTTGATGATCTCAACTGTTCATCACTATCATGCATCGGGATTCTACTCTTCTTGAGATCTTCAGGTGCCTCGGATAACCAATGCAAGCTGTTAGCCGAGCAAACCAAATGCAAGGAGCCACGAGCGAATAGCCTCTCGTAGAACGACCCAGGTACCATACCGGTGATCACAGCAGTAGGGCGAGCGAGCGCTTCATCACCACTGTGCTTCAGTGTGTCCAAGCTCTTCGCCACGGCGTTGAAATCGTTGTCAGGCAGATCGTTCAGGAGCACGCACATCTCCGGCGGCAGCTGCTCGTGCTGCGCGCAGTAGCGGTGGATGGCGTCGACGGCGGCAGAGACGAGCGTGAGCGCGTTTGGTCCGGAGGAGCAGCCCAAGTCCGCGATCACCAT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0340700.1 | 6 | 11986093 | A | G |
| Osa06LNT0340700.1 | 6 | 11986380 | A | G |
| Osa06LNT0340700.1 | 6 | 11986937 | G | A |
| Osa06LNT0340700.1 | 6 | 11988963 | T | C |
| Osa06LNT0340700.1 | 6 | 11989326 | A | G |
| Osa06LNT0340700.1 | 6 | 11989576 | C | T |
| Osa06LNT0340700.1 | 6 | 11986480 | C | T |
| Osa06LNT0340700.1 | 6 | 11987314 | T | C |
| Osa06LNT0340700.1 | 6 | 11986104 | A | C |
| Osa06LNT0340700.1 | 6 | 11987299 | T | C |
| Osa06LNT0340700.1 | 6 | 11987710 | A | G |
| Osa06LNT0340700.1 | 6 | 11987523 | T | C |
| Osa06LNT0340700.1 | 6 | 11987801 | G | A |
| Osa06LNT0340700.1 | 6 | 11987902 | T | C |
| Osa06LNT0340700.1 | 6 | 11988030 | A | G |
| Osa06LNT0340700.1 | 6 | 11988149 | A | G |
| Osa06LNT0340700.1 | 6 | 11988341 | C | T |
| Osa06LNT0340700.1 | 6 | 11988347 | T | C |
| Osa06LNT0340700.1 | 6 | 11988591 | A | G |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa06LNT0340700.1 | DTM_#DNAt_MULE_japo_Os0513 | Chr6 | - | 11987263 | 11988553 | 1290 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0340700.1 | osa-miR5529 | Cleavage | 5.0 | 21.095 | 1 | 21 |
| Osa06LNT0340700.1 | osa-miR812s | Translation | 5.0 | 10.423 | 1 | 24 |
| Osa06LNT0340700.1 | osa-miR5812 | Cleavage | 5.0 | 19.721 | 1 | 24 |
| Osa06LNT0340700.1 | osa-miR5812 | Cleavage | 4.5 | 15.553 | 1 | 24 |
| Osa06LNT0340700.1 | osa-miR7694-5p | Cleavage | 4.5 | 23.495 | 1 | 24 |
| Osa06LNT0340700.1 | osa-miR395t | Cleavage | 4.5 | 17.181 | 1 | 21 |
| Osa06LNT0340700.1 | osa-miR395t | Cleavage | 5.0 | 22.141 | 1 | 21 |
| Osa06LNT0340700.1 | osa-miR395a | Cleavage | 4.5 | 17.181 | 1 | 21 |
| Osa06LNT0340700.1 | osa-miR395a | Cleavage | 5.0 | 22.141 | 1 | 21 |
| Osa06LNT0340700.1 | osa-miR438 | Cleavage | 5.0 | 22.156 | 1 | 21 |
| Osa06LNT0340700.1 | osa-miR815a | Cleavage | 4.0 | 17.358 | 1 | 21 |
| Osa06LNT0340700.1 | osa-miR815b | Cleavage | 4.0 | 17.358 | 1 | 21 |
| Osa06LNT0340700.1 | osa-miR815b | Translation | 4.5 | 4.907 | 1 | 21 |
| Osa06LNT0340700.1 | osa-miR815c | Cleavage | 4.0 | 17.358 | 1 | 21 |
| Osa06LNT0340700.1 | osa-miR1436 | Cleavage | 5.0 | 14.786 | 1 | 21 |
| Osa06LNT0340700.1 | osa-miR1860-3p | Cleavage | 2.5 | 21.678 | 1 | 22 |
| Osa06LNT0340700.1 | osa-miR2918 | Translation | 4.5 | 20.178 | 1 | 21 |
| Osa06LNT0340700.1 | osa-miR5159 | Cleavage | 4.5 | 15.522 | 1 | 24 |
| Osa06LNT0340700.1 | osa-miR5828 | Cleavage | 4.5 | 12.43 | 1 | 21 |
| Osa06LNT0340700.1 | osa-miR815a | Translation | 4.5 | 4.907 | 1 | 21 |
| Osa06LNT0340700.1 | osa-miR815c | Translation | 4.5 | 4.907 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0340700.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0340700.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0340700.1 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0340700.1 | 6 | qPHw6-2 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0340700.1 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0340700.1 | 6 | gw-6 | Morphological trait | Seed | C235 | G294 |
| Osa06LNT0340700.1 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0340700.1 | 6 | qSFWd6 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0340700.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0340700.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0340700.1 | 6 | qNFGP-6 | Physiological trait | Source activity | RM136 | RG456 |
| Osa06LNT0340700.1 | 6 | gp6 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0340700.1 | 6 | qSF-6 | Physiological trait | Source activity | RM136 | RG456 |
| Osa06LNT0340700.1 | 6 | qTL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0340700.1 | 6 | qRS6-1 | Morphological trait | Shoot/Seedling | RZ667 | RG424 |
| Osa06LNT0340700.1 | 6 | qLVBSL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0340700.1 | 6 | qLVBTL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0340700.1 | 6 | qGY6-1 | Morphological trait | Seed | RZ667 | RG424 |
| Osa06LNT0340700.1 | 6 | qSL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0340700.1 | 6 | qPH2-6-1 | Morphological trait | Dwarf | RG424 | RZ667 |
| Osa06LNT0340700.1 | 6 | qHD-6-1 | Physiological trait | Flowering | RG424 | RZ667 |
| Osa06LNT0340700.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0340700.1 | 6 | qTN2-6-1 | Morphological trait | Culm/leaf | RG424 | RZ667 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)