© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0342200.1
AAGCGAAAGATAGTAATGTTTCAGGATCAACTAATATAGAAACAGTCAAAATTGTCAACCTCATTCAGCATCTGCTTCCTAAATGAAAAGAGAAACAAGATGGTCAAGCTTAATATCCCAATATGTATTGGAACTTATCAGCAGAGTATATTTACACTTACATACAAGTACTCAGCTTACATTGCATAAAGAGCAGCTATAGTGGAAGTAAAAACTATATACAGACAAATTACCCTCGGCGCTTGCTGAGGCGCCATGAGTTTGGCTCGTTGTATCTGTCATACAGAGGCTCAATCCTTTCTTGGCGCTTCCGCTTACTGATCTTCGTTGGGTCTGCAGATCTGTAGAACCTCGGTGCCAGTTCAACAAGCCATCTTGGGTCAATGGCTGTCACCTCCCTCATGTACTCTTTTGTGGTCATGACGACTTCATGATAGATAACCCACTCTGGTTGCTGCTGGAAGAGAGCGCTGGCAGGGTGGATATACACCTGCTGATGATCAGCAATGGTCCTGTATCCTCCCTGGGGATCCTTCCTGGCAGCGTGGAAGAAGAAGCCAGCAGTGATGGCTTTCCTCACCTTGGTGAGATCATTCCCTGCAGAGACAACGTTAAGCTTATACTTGTCCATAATCTCAAGGAGCTGTTTTCTGACATCCTGTGCTCTCCTCAGGGATGTTAGCTGGACAAAATTCTCATAGCACCATGGACCTGAAAACTGCTTTGCCTTCCACGCCTGATACACGGTGAGCAGGGTGAGGTGATCCCCTTCTGGTTGGAAAAAGTTGCCCCTTTTCCGATCGGCTTGAGCTTGTTTTTCCCTTGGCCGGTAGAATATGTTCCCAGTTTGAATCATCGCAATGATGGTCAGTATTTCATCACTGCATCCGAGGTCCACACTAGCAAGGAGCATCTTTGAAAGTGGTGGTTCTTGTGGAAACTCCGCCATCCTTCTCCCTACTCTTGTAAGGAGACCCTCCTCATCTAAGGCACCAAGGTTGTACAGTTGTTCCATTGCAGTTATGAGTGATTGAGGAGCTGGGGGGTCCATGAAGTCAAATGACAGTAGATCGTTTATTCCCATTGCCTTCATATTGAGGACCGTCTCCCCCAAGTTGATCCTCTGAATTTCTGGAGTAGTTGTGGGGGGCATTTCGTTGCGATAGGCACTTTCAGTGTATAGACGATAACACTTTCCTGGGCCTGTACGTCCAGCACGCCCTGCCCTCTGTTTAGCTGATGCTTGAGATATCGGTGTGATGATCAGTGAATCCAGCCCTTGTTTTGGGTTATACACATTGAGTTTTGCAAATCCTGGGTCAATTACATAATATATCCCATCTATTGTAATAGATGCTTCCGCTATGTTAGTGGCCACGACCACTTTCCTCTTCCCAGGAGGAGTAGGTTCAAAGATCTTTGACTGCATTTCAGCTGGCTGAGCACTGTACACTGCATATATCAGCAATTCTGGTACATTCCTACCTAGAGACTTCATCCTCTCATAGAGACACTGACAGGCATGATCAATCTCTTCCTGGCCAGTTAAGAACAAGAGGATATCACCTTCAGGTTCAGTCAGATGGATCTGTGATACTGTGAGCAGCGCAGCATGCATGTAATCACTCTCTGGCTGTTTTGAATAGAGTATCTCCACAGGATATGTTCTTCCGGGAATTGTAAAAATATTACAATCGAAGAAATATCCAGAGAACTTCTCTGCATCAAGAGTGGCGGAAGTGACTATTAACTTGAGATCAGTTCTACGCCTAATTAGCTTCTTGAGTAAGGCAAAGAGAATGTCTGTATATATAGTCCTCTCATGTGCCTCATCAAGCATGACCACGGAGTAACTAGAGAGGTCAGTGTCCAACAAAATTTCACGAAGGAGCATGCCATCCGTCATGTACTTAATGACAGTATCTGGTCCAGTGTGATCATCAAAACGTATTGAGTAACCAACTTCCTCTCCCAATCGGCAACCAAACTCTTCCGATACTCGCTTGGCAACTGACTCTGCAGCGACCCTGCGAGGCTGAGTACATGCAATTTTCCCCCTCGTAATATAGCCTGCCTCAGCAAGGTACTGTGTAACCTGGGTTGTTTTCCCTGAACCGGTCTCACCAATAACAACCAGAACTTGATTGTCACGAACAGCTTCGATAAGCTCATTCTTCAGCCTGAATATTGGAAGACTCTGCCTCTGTTCCAGGATTGAAAGCCTTGAAGTCTGACCAAATGTTACAGTCTTCCCATAAGCCTCTTTCTTCCACTCTGGCATGCTTTCAGCAGATAATCCAACACCGCGTAGCTCTTGTGCGAGATACCGCCCACCGACCTCAGGCACAGGATCCTCCCATGGCCGATTCAGATCCTTTGGGATGGAGTCAACCAATGCTCTTTGATCCTCGTTCCTGATATCACGCCACTCCTTGATAAGCGCACTCTGCAGAACCGCCGCTCGACTCAGCGACCCATCAGGGTTCGTGGAAATCCTCACTGGGGACACATCAATTGTGGACCGACCCTGTCCCCGCAAGAATGCTGGCTCATCTTCATTAAGCTCAATCTCAAGCTCCTCCTCCACACCTTCCTCCTGGTAATTCATCCCCTCGCTATCCTCATCATCGAACGCCGGGTAATCCTTCGCATTCAGAACCCCTGAAGCAATCAGCTGCTTCATTTCCCACCTCTCCGGCGAGCTCATCCGCCTAATCGGCCGCCGCGACGATGCCGTGCCAGTCTGGTTGTCCTCGGGGATCACAATTCCTGACACCCCCGTCCTTCTCCTAGTGGCGGCGGCTCGATCGGTCCACGGATTCGCCATCGGCCTCGGCACATCATCCTCCCCCCTAGCACGCTGCAACGGTAGGAGGTCCTTCCCCGTGTCCTGGTCGACGTCCCGCATCGACAGCCCCAGATTGCGCCCCTGCACGGACACGATCTTGACGAACACCTCCTGCCCACGCTTCACGGCGATTCGGCGGCCGGGCATCTCGGAGACATGGACGAGCCCCTCGCGGCCGCGCGCGTCGTCGAGGCGGACGAAGCACCCGGCGTCCGCCAGGCCGGTGACCTTCCCGCGGCACACCTGGTACAGCCCCGGATCCCCATCTCTCACCCGCTCCTCCGCCTTGTCCTTCCCGCAAACCCTTGCACCGGTGCCACGGGAGGCAGGGTTTTGGGGGGCGGGGGCGGGGGCGTCGTCGGCGTGGGTAGGGATGGCGTGGATGACGGTGTGGAGGGTGCGCGCGAGGTAGTCCGGCAGGTCAGCGCCGTGGGCCTTGAGCTTGGCGTCGAAGTCTGCGACGGAAGGGGATGCGCGGCCCAGGTCGACGATGAACTCCGCGAGGACGCGGTCGCCGACGCCGAGGTGCGCCTCCAGCTCCGAGCAGACCTTGGAGACGAGCGAGAGCTGCGTGAGCCGCCGGAGCCCGTCGCGCACCGCGCCGCCGGCAGGGGTCGACACCTTGGCCGCCACCATTGGGTTGGTTTTCGCGTGTCGAACGGCCAATAGAAGTTCTCTTGCACCTTTTCCTTGATGGTCCCTCCTGTTGCTTGTGTAAAATTTTACAGACCATTAGATATACCAGATTCTGAAGGCTGTCTTAATTCAATTCGGCAGCATCCTCTCCCAAGCAGCAAAAAAAACCTATAAATGTTCTCTTTTTTTTTCAGTGAACAAAGTGACACAGCATCAGGCATGGACTTGAACTTGTCACCACCAAATCAACCAAATCAGAACACACATTGTAGCAGGCAACGCAGCAGAGGAACACAAACACGTCACCAAGATACCTGCTTGACGTTGGGGTGCTCCTTGCAGTCCTTCCCTGCTGAAACAAACACGTCACACCAAATCGATCAGAACGCCAAATCGATCAGAACGCACACCCAAGCCACCTTGAATGGAGAACCAGCAGCACAAACTCTCCTTCCTCTCCGTCGCGGCGCGAGCAGGGAAGCAGGCGGTTTGGGCAGGAGGCGGCGGCGGTGGGCGCAGCGGCTCAGGCGGGAGGAGGCGGCGGCGAGTGCAGCCGCGCGCGAGCGGAGTGGCGCCGGCGGGCGCGCAGTAGGCGAGCGGTGGGCGCGTAGAAGGCGGCGGCAGGCGGCGCCGCGCAGGAGGATAGCTTTTCTTTTTTTTTTTTTCTTTTTCGGCGTTAGTGGATTCTTTTCTTTTTATTTTCGCTAACCGCTG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0342200.1 | 6 | 13724018 | T | C |
| Osa06LNT0342200.1 | 6 | 13724163 | A | G |
| Osa06LNT0342200.1 | 6 | 13724756 | A | G |
| Osa06LNT0342200.1 | 6 | 13725364 | T | C |
| Osa06LNT0342200.1 | 6 | 13725522 | C | T |
| Osa06LNT0342200.1 | 6 | 13725594 | A | T |
| Osa06LNT0342200.1 | 6 | 13726292 | T | G |
| Osa06LNT0342200.1 | 6 | 13726302 | T | C |
| Osa06LNT0342200.1 | 6 | 13727079 | A | T |
| Osa06LNT0342200.1 | 6 | 13727188 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0342200.1 | osa-miR5530 | Translation | 4.5 | 15.925 | 1 | 21 |
| Osa06LNT0342200.1 | osa-miR171a | Translation | 4.0 | 24.758 | 1 | 21 |
| Osa06LNT0342200.1 | osa-miR397a | Cleavage | 5.0 | 17.043 | 1 | 21 |
| Osa06LNT0342200.1 | osa-miR171b | Translation | 4.5 | 24.758 | 1 | 21 |
| Osa06LNT0342200.1 | osa-miR171c-3p | Translation | 4.5 | 24.758 | 1 | 21 |
| Osa06LNT0342200.1 | osa-miR171d-3p | Translation | 4.5 | 24.758 | 1 | 21 |
| Osa06LNT0342200.1 | osa-miR171e-3p | Translation | 4.5 | 24.758 | 1 | 21 |
| Osa06LNT0342200.1 | osa-miR171f-3p | Translation | 4.5 | 24.758 | 1 | 21 |
| Osa06LNT0342200.1 | osa-miR171i-3p | Translation | 5.0 | 24.758 | 1 | 21 |
| Osa06LNT0342200.1 | osa-miR535-5p | Cleavage | 5.0 | 16.7 | 1 | 21 |
| Osa06LNT0342200.1 | osa-miR529b | Cleavage | 4.5 | 21.428 | 1 | 21 |
| Osa06LNT0342200.1 | osa-miR1428a-5p | Translation | 5.0 | 19.642 | 1 | 21 |
| Osa06LNT0342200.1 | osa-miR1441 | Cleavage | 5.0 | 20.577 | 1 | 21 |
| Osa06LNT0342200.1 | osa-miR1862e | Cleavage | 5.0 | 12.264 | 1 | 24 |
| Osa06LNT0342200.1 | osa-miR2878-3p | Cleavage | 4.0 | 16.016 | 1 | 24 |
| Osa06LNT0342200.1 | osa-miR5159 | Cleavage | 4.0 | 20.107 | 1 | 24 |
| Osa06LNT0342200.1 | osa-miR5507 | Translation | 3.5 | 15.015 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0342200.1 | 6 | qSFWd6 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0342200.1 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0342200.1 | 6 | gw-6 | Morphological trait | Seed | C235 | G294 |
| Osa06LNT0342200.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0342200.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0342200.1 | 6 | gp6 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0342200.1 | 6 | qRS6-1 | Morphological trait | Shoot/Seedling | RZ667 | RG424 |
| Osa06LNT0342200.1 | 6 | qGY6-1 | Morphological trait | Seed | RZ667 | RG424 |
| Osa06LNT0342200.1 | 6 | qLVBSL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0342200.1 | 6 | qLVBTL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0342200.1 | 6 | qSL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0342200.1 | 6 | qTL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0342200.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0342200.1 | 6 | qHD-6-1 | Physiological trait | Flowering | RG424 | RZ667 |
| Osa06LNT0342200.1 | 6 | qPH2-6-1 | Morphological trait | Dwarf | RG424 | RZ667 |
| Osa06LNT0342200.1 | 6 | qTN2-6-1 | Morphological trait | Culm/leaf | RG424 | RZ667 |
| Osa06LNT0342200.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0342200.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0342200.1 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0342200.1 | 6 | qPHw6-2 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0342200.1 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)