© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0342800.4
GTGGAGTATAGGACAAAGCACATATTCGGCCATTCGGGTGTACGCGTATTACTGTCAGTGCCAAAAGCAAAACAGGGTCAGATTTACCAGACCACCGCATGTGAGCTCCTACACTTCTTTGCGGTTCCTTTTTGGGCAACAAGGCCTCTGGTATACTGGGCTACTGGCATCTCTCCCGTGGAAAGGCATTTGCAGAACCTTGGAATTTGGGAGCTTCATTCTCTTGCCTTTGACGCCTTGACCCAACATGAACCATCAGCAGTCCAACACTTCTCTGGTCCCAACTCCCAAGCGGTTACTAGGGCCAAACTATTGTTTCATTTCACCGGAGGGCATCTTCTCATCTTCTAGCTGCTGTGTGTAAATAATTACATCCCATAATGCTCCTTTTACCTGATCCGATTCTTGAAAAGAAATTTCACATCGCCAGTAGCTGATTGCCTCTTTGCAGTAATTTGCATTACAGCACCATCAGCTAGCATACGCTGAACAACCCTTGCTATATTTTTTGCATCATCTATACCGAGATGATGGCTTCCGACGATTGGCATTTGTAGCTCCCTCATCATTGTCATCATTCCGGTAGCCCTTCTGTTATAGAAGTTGAGATAGATATCCTTCAAATTGATCCACTCCATAAAGTAAGAAGGTAACTTAATTTTTGAAACCCTGCACTGTTCAGGTACCTTTGTCTTCAGATCCCAATTCCCATTTTCAATCAACTCTAACCTCCAAAATTTTCCAAAGTTCCTGTTCCACCAGGATCCTAAACCAAGTGATGAATGCTGCACTGTTGAGTGCTCCTCCTTGCTCCTTTTTCCAAAATTTGTGATGTTCGATCCAGTCTTCAAACTCTTGAAGTACTTCCATGAAAGGTATAGCAGTATCATGCCATACACTACATATTACACAACAAATTAGTACATATTACTTCCACATATCTAGAGTTAACAAATGCACGTCAAGAATTCTAGATCATAGAAATATTTTAGGATGACAATGGAATAACACTGCAAACACAAAGTGATAATATGCATAAAATACAGGTGACTAATGAAGATGGGTTGATGACAAAACACAGTTTTACCAAAAGGATAGTGGTATACAAAACTCAATCCATAAGAAGGAATGCAATCAAGAAATAAAATATATAGAACATTTTATACAAGAAATAAAGCAAACCAAACTAGATTAAACCTAGACCAGTGGATACAGTTTAGAACATCACAAACTGAAGTTACAAACTCATAAAGAAAATGATAAATAAGACAACTGAAGAATCTAGAAATTTTACAAGCTAAAGGGTTTGATTCGCCTCTAGATGTATCCATATAACCAGCCAATTCATGGGTTACATTCATGATAAGACTAACTGAACCTATGTTAAGGAAAAAAAAAACGACTCCCGCTTTAACAGCAAAATAGTTAATGATGTATAGCTACTGAAAATTACGATCAAATCATCAAACAAGTTATTCTGCAGTGAGAAACAGAGTTAAATAGTGCTACAAATACCGGTCAACTCCAAATTTCCCATATTTCCCTTCAATATATTCTCTTATTCTTTGCTCACTCATCGCAGTAGGGTGTACAAACCTACAAGCAACACACGAGGGGATAGAGATAGTAACTGATATTACTGAAAAGGCAAGAAAATACAGAAAGGATTAACATCACAAACGAATAAAACAATATGAAATATTGCATATACTAAGTTATACAATGTTACAGTGTCACATTTTTCTCACTTATTTAAAATATTTAGATGTCTATTCAAACTTACAGCATCACACAAGAAAGAAACAGCTGATATAATTTGTCTGACTGTAACAAATGCTACACTATCATGCGAGTATTATTCACACACCATGTATTGGGCTGTCCAGTGGGTCGCCTCTAAGCCCAATGCCCATGACACCAGCTAAAATGGCATGTCTTTAGAGGATATTTTCTGCATGTGTGGTATATATGGGCTGTTTGGATGGTTCCATAACAATATATTTGGCGTGTGGCATGCCGCACATTGTGTGGCCAAGAATTTGTTGGCCACAATTGTGACAAGTTGTGGCAAAAAATTCACTCTATGACAAGTGGACCAGCTAACAGAAAGTGTGGCATAACTCACTTGTGGCATGAACCAAACGCTAGCCTTAGTTGGTCAAACTTGGTTGCCACAAGTTTAGCAAAGGTTGGCACTCAACCAAACATGCATTGCCCATATTCATGATATTGATATCCTATGGTTTTTAGATTTTGCAAAGAACAAACAGCATGTAAATTCAGGACCTTGATTCTTTCTTTTAGAAAGTAGAAATTCAAAAGGATATTTTTGGGAGGAAATTAAGAACTTGAGTCATGCAGAACCATTGGATAAGAACAGAAAAGTAAAACCAGGAAAAATATTTTTGGTTCTGTTGTTTGTCCATGAATCCCTAGACACACTCTAGCTGCAGTATAGCTGTTGCAAAATTTCCAATTGTAGCGGTTTATGTGCATCCATCTAGTCATAAAATGTACTTCCTCCGTTTCATATTATAAGACTTTATAGCATTGCCCACATTCATATATATGTTAATGAATCTAGACATATATATGTGTTTAGATTCATTAACATCTATATGAATATGGGCAATGCTAGAAAGTCTTATAATATGAAACGGAGGGAATACCTTCCTAAAAATTTAATTTGTATTCAGTTATATGCTTATATGTTTTAATTCACTCAATTATTACACATCTCAACCAGCATGGGCTCTCCTGTATGAAACAGAACAATATACTGAAATTTTAATTTTGCCATTCATTGCGAGTTTTAAGACTATATTATGTTTTCTACCATCCCTGTTCAGTCAACAGTAAACCTCTCCTTGCCCCTCTTCCGTTACTAAACCACTAAATCTCTCCTTTTTGGCATCCATGCTCAGTCAACACTGGTTACAACCAAATTTACTTTTAAGAATAATGCCGTTATGAAGTTAACTTAATAAAAAATCGAAAAAGAATACAAAAATCCTGAAAAAGATCATGGATTACCCTGAAACAAATCTTTCATAATTTCACAAATAAAAATACCCTAGAGAACTTTTTTAGGTTCACCGCATGAAAATTGAAATGATTGAGGCGCTTTCGAATAGTATAGTTACATCAAATTTTCCTCAAATATATATGTTGAAATAATGAAAAATTTTCAATATTCCTCAATTGTGTTGTAAAAAGTTCTTACAGGAATTTATGATTTCTCTTAAGTGCCCCTTTTTTGTTGAAAGCTTTGAAAACTATAAATTTGCATAAGTTTTCAAGAATTTTCTCCGTAAGAGATGGTCTTGTGGGAAGTTTGATGATCAACTAGCCTTGAGTAGAGTGACGGGAAAAGAGAAAAACACTCTAACAAACGAGTTGCAAAAGAGAGGCAGGATCCTTAGATGGTTGAGGGAAGTATAATATCGGTAAGTCAGAATGAGTGAACATATTTTCAAAAAAAAAAAATCGAAGTAAAAAAGACAACATATTCCACAAAAGGGATTCAAATATTGCATCTTAAATCTTAATCTCATAGTTCTTCGATTAAATTTCTCACTAATCTTGATAATAGTTCTTGGTGCTCAACTGAGTGAAATGAGAACCATACAAAGCTAAACCTTCTGTATTTAAACTAATAAAGAACTATATTACCACCAAAGAATATTCACAAGAAATTAGAGAAATAAAAGTTGCAAAACTCATCTATGTTTGGGGGCGAGTTTGGTAATCATTCAAATAGTCTTATGTATTGAGAAGAATATTTCAATAACTATTAATGTACAGATGGGCTATACCTGTGAAATGAATCGACGAACTCCATGCTTTGGGCATCAATCATTACAACTGGGAATTCAAGAATTTCAACCTTACCTTCCAAATCAAGGACCAAAAAGTAATCCAATTTCTGAGATTTCACTTTATCTGCAGCTGAATAATTCACTGGAAGGTCTGTTGGCAGATTGTGATTGAATTTCTCAAGATGCAAAGTATCATTCAACATGGTGCATTTCCCCTGGGTGTAGTACAGGCACGTGGGCTTCCATGGGCGCCTGGAGCTCGGCCGCGGCGGCGCCTCCATCACCGCCCCATCCCCGTCCGCAGAGGGAAGCGGAGAGGCCTGAGATAAGGCGGCGGCGATGGCGAAGCCTCGGTGGTGGGGGACGCGAGTCACGCGAGGGCGCAAGACGGAGGAGGGCGAAGAGAAGGGGCGCAGTAAGGAATGGATCAGGAAGGGGGAGGAGAACGCGGGGGGAGAAACCCTAGCGAGCGCCATCTAAGGCGAAGCTACCCTACAGTTCGCTATGGCCGC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0342800.4 | 6 | 14419054 | G | C |
| Osa06LNT0342800.4 | 6 | 14419110 | G | C |
| Osa06LNT0342800.4 | 6 | 14419409 | C | T |
| Osa06LNT0342800.4 | 6 | 14420189 | T | C |
| Osa06LNT0342800.4 | 6 | 14421883 | T | C |
| Osa06LNT0342800.4 | 6 | 14422122 | A | G |
| Osa06LNT0342800.4 | 6 | 14422811 | A | G |
| Osa06LNT0342800.4 | 6 | 14423134 | A | T |
| Osa06LNT0342800.4 | 6 | 14423338 | C | T |
| Osa06LNT0342800.4 | 6 | 14423616 | T | C |
| Osa06LNT0342800.4 | 6 | 14423783 | T | C |
| Osa06LNT0342800.4 | 6 | 14423868 | A | C |
| Osa06LNT0342800.4 | 6 | 14423969 | T | G |
| Osa06LNT0342800.4 | 6 | 14425137 | T | A |
| Osa06LNT0342800.4 | 6 | 14425259 | C | A |
| Osa06LNT0342800.4 | 6 | 14425931 | G | C |
| Osa06LNT0342800.4 | 6 | 14426591 | G | C |
| Osa06LNT0342800.4 | 6 | 14427044 | A | C |
| Osa06LNT0342800.4 | 6 | 14427639 | G | A |
| Osa06LNT0342800.4 | 6 | 14428018 | C | T |
| Osa06LNT0342800.4 | 6 | 14428331 | G | C |
| Osa06LNT0342800.4 | 6 | 14428394 | A | C |
| Osa06LNT0342800.4 | 6 | 14428711 | T | G |
| Osa06LNT0342800.4 | 6 | 14421692 | A | G |
| Osa06LNT0342800.4 | 6 | 14420427 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0342800.4 | osa-miR5535 | Cleavage | 5.0 | 21.502 | 1 | 22 |
| Osa06LNT0342800.4 | osa-miR812v | Translation | 5.0 | 17.355 | 1 | 24 |
| Osa06LNT0342800.4 | osa-miR5830 | Cleavage | 4.5 | 10.579 | 1 | 24 |
| Osa06LNT0342800.4 | osa-miR6248 | Cleavage | 4.5 | 9.69 | 1 | 21 |
| Osa06LNT0342800.4 | osa-miR6255 | Cleavage | 4.5 | 9.262 | 1 | 22 |
| Osa06LNT0342800.4 | osa-miR437 | Cleavage | 4.5 | 8.749 | 1 | 21 |
| Osa06LNT0342800.4 | osa-miR169r-5p | Cleavage | 5.0 | 20.698 | 1 | 21 |
| Osa06LNT0342800.4 | osa-miR1436 | Cleavage | 4.5 | 6.507 | 1 | 21 |
| Osa06LNT0342800.4 | osa-miR1439 | Cleavage | 4.5 | 6.35 | 1 | 21 |
| Osa06LNT0342800.4 | osa-miR1854-5p | Cleavage | 4.0 | 11.552 | 1 | 21 |
| Osa06LNT0342800.4 | osa-miR1882a | Cleavage | 5.0 | 11.798 | 1 | 24 |
| Osa06LNT0342800.4 | osa-miR1882b | Cleavage | 5.0 | 11.798 | 1 | 24 |
| Osa06LNT0342800.4 | osa-miR1882c | Cleavage | 5.0 | 11.798 | 1 | 24 |
| Osa06LNT0342800.4 | osa-miR1882d | Cleavage | 5.0 | 11.798 | 1 | 24 |
| Osa06LNT0342800.4 | osa-miR1882e-5p | Cleavage | 5.0 | 11.798 | 1 | 24 |
| Osa06LNT0342800.4 | osa-miR1882f | Cleavage | 5.0 | 11.798 | 1 | 24 |
| Osa06LNT0342800.4 | osa-miR1882g | Cleavage | 5.0 | 11.798 | 1 | 24 |
| Osa06LNT0342800.4 | osa-miR1882h | Cleavage | 5.0 | 11.798 | 1 | 24 |
| Osa06LNT0342800.4 | osa-miR1320-5p | Cleavage | 3.0 | 9.401 | 1 | 21 |
| Osa06LNT0342800.4 | osa-miR2101-3p | Translation | 4.0 | 16.932 | 1 | 22 |
| Osa06LNT0342800.4 | osa-miR2122 | Cleavage | 2.0 | 19.427 | 1 | 22 |
| Osa06LNT0342800.4 | osa-miR2871a-3p | Cleavage | 4.5 | 15.655 | 1 | 21 |
| Osa06LNT0342800.4 | osa-miR2871b | Cleavage | 4.5 | 15.655 | 1 | 21 |
| Osa06LNT0342800.4 | osa-miR5073 | Cleavage | 4.0 | 21.049 | 1 | 23 |
| Osa06LNT0342800.4 | osa-miR5495 | Cleavage | 4.5 | 12.872 | 1 | 21 |
| Osa06LNT0342800.4 | osa-miR5501 | Cleavage | 4.0 | 13.456 | 1 | 21 |
| Osa06LNT0342800.4 | osa-miR5504 | Cleavage | 4.5 | 3.298 | 1 | 21 |
| Osa06LNT0342800.4 | osa-miR5081 | Translation | 5.0 | 13.992 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0342800.4 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0342800.4 | 6 | gp6 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0342800.4 | 6 | qRS6-1 | Morphological trait | Shoot/Seedling | RZ667 | RG424 |
| Osa06LNT0342800.4 | 6 | qGY6-1 | Morphological trait | Seed | RZ667 | RG424 |
| Osa06LNT0342800.4 | 6 | qLVBSL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0342800.4 | 6 | qLVBTL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0342800.4 | 6 | qSL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0342800.4 | 6 | qTL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0342800.4 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0342800.4 | 6 | qHD-6-1 | Physiological trait | Flowering | RG424 | RZ667 |
| Osa06LNT0342800.4 | 6 | qPH2-6-1 | Morphological trait | Dwarf | RG424 | RZ667 |
| Osa06LNT0342800.4 | 6 | qTN2-6-1 | Morphological trait | Culm/leaf | RG424 | RZ667 |
| Osa06LNT0342800.4 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0342800.4 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0342800.4 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0342800.4 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0342800.4 | 6 | qSFWd6 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0342800.4 | 6 | qPHw6-2 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0342800.4 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0342800.4 | 6 | gw-6 | Morphological trait | Seed | C235 | G294 |
| Osa06LNT0342800.4 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|---|---|---|---|---|---|---|
| Osa06LNT0342800.4 | osa-MIR11339 | 92.715 | 151 | 4 | 154 | 1.85e-57 | 219 |
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)