© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0343100.2
AAACTGACCACGTTATATAAAAACTAAATAAATTGAAAATTGCATCTTTCATGTACATATAAATAATTTTGCATAGCTTAACAATTCAGATATACTGCAGATTTCTCTTGCTTCGCGGAAGAACACGGAGATATCAGTGTAATATCTGGAGTCCAGATGCCCACCAATTCCTGACAAAGCATAAATGTAAAGATAAATCTATTTGTTTGGATTAATTAAATTCAAGATGTGTCAAAATCGACTTAAGAGTCAATATAACAAATCATTAACACTGGTCATATGCAATTTGAGATTTGAGGTATACTTGAAATGGGATTTTTTTCATAAAAATTATTGGTAGCTATGGTTAGGGAAATACTGTAGAATCAGACTGCAAGTAGTAGAGATGAACCATCTGCTGATTTTGAACACCACCTACAACATAAGGAAGCAATCCATGAAAATTGGTCAACGAAGATAATGTCCGTAATAGAAGTTCAAAATGACCACATGAGATGTCATAATAAAGATTTGATAGGATCTATATTAGTATAAAGCAAAATGAGTTAACTAAAAAGTTCTCATGTAAACCACAAAGAATGAGTTGAATAAAAGTGTACTAATTATTCTAGTAGCATTCAAGGGGCAGCAAAAAACCACATTCTACTAATCAAATATTACCAAACTATTGATGATCCAATACTGAAAATGAAACTATTCCTCAGCTAATAGGTCTTGCAATGCAACCCAAGAAAAACCTAATCCAATAACTCTTAATTAGATAATATGTTTTAAGTTTTACTAATGATGAATTAGATATATTGCTGGACCTTAACATATTTTCACAAACATGATAAATTTATCTCCTAGAGTTGGATGTAAAGATTAAAGTTAGACTTTCTATGCAATAAGATGTATTATACAGTTCATGAACTGAACAATATGACAATCCCGTCATAATTTGAGAATAACAATTTCTTAATGGTTTGTAAACTTACGTATAAGTTTTAATTTATAGAAAGCACGACCTAGGAGGCCATGACCCATGAGGTCTAGAGAACTTTTGGCTTATTCATAATATCTAGATCAAGATTCATGGTACTAAATGTGTAATCCTCTCTGTGGAAATTGCAAAATAGTCCTGGCATGTTATATTATCAAAGAACAATTTCGGTAAACTCCTCCTGAAAAAGTAAAAAGCTGAATAATTGCTATTACAGTTGAATACATAACTTGTATGTTTAGATAATAGGTTATTCCGGTGACAGAATATGTGCGCCATATAAAGAGGAGAACATGGGGAGTCCATGTGAACGATTCAACTTAATACTGCAAGTACTCATGTGTAAACAGGTAAAACTGATCTATATAGACTACCGAGCAGAGAACGAAGAAGCACATCTAGACTTTCCCGCATGAGTAAGAAGAAAAAACTGAACACAACTTGCTTCACACTTGTAATTTGGGCATGCAAAAACAATTGGTTTGCTCTAACGTGGAGCAAATCTTCTAGCAGCGAGAATAATTGGGTTGCAAAAACAAAAGGAAGCTCTAACATGGAGCAAATTTTATAGCAGCAAGAACAATTGGTTTGCGGAGCTAATTCAGGTAAGAATTGCTCTCGAGAACAGTAGGATTTAGCTACCTAAGGTATGCTCATCTCTGACAACATGGCTGCAGAGGCAAATTAGTAAAGAAAATAATTCACATTAGACTCAATAAACAATATTTGGAGAACTTAAAGGGTTTTACCTTGAATCAAAGGTTTGATGTAGGCAAGCGACCTTGAATATATAGAAGCTAAACATTTAATAATCATGTGGAGTGAAATAAGATGTACTGAGATAATAATATAGCTTGTTATCATGTGAAATACTCCATCGTATACATGGGCTGGTAGCAATCGGATGGATGGCCAAGCAAAGCAGTTTAACAGAGCTTGCTGTGGGCACTCTGTCGAAGGCTGCATTTGCGCCACACATGCCTCTTGGAGAACAGCACATTCGTATGGGCTCCTAAGTAGCTCATTCTTCTCCATCTGTAAACAGGGTTGGGAGAAGTTTCCTGAGTGGATTAAGATATATGTGCTAACTCCAACTGCATCTGGTAGAAATAAGATCCAAGCAACCTATGTAGTGGAGTACCAGCAGATCTATTGCCATTAGATAGCTTGCTTCCACTGCTGATGTAAATGTGATGAGATCTAGCATGCATACTCCCTCCGTCCCAAAAAAAAGACAACCCCTGGTTTCCGTGTCTAACGTTTGACCGTTCGTCTTATTTGAAAAAATTATGAAAAAAATTAAAAAGACAAGTCACACATAAAATATTAATCATGTTTTATCATCTAACAACAATAAAAATACGAATTATAAAAAAATTTCATATAAGACGAACAGTCAAAATTGGACACGGAAACCCAGGGTTTGCCTTTTTTTTTTTTGGACGGAGGGAGTACTTTGCTGCAGAAAAAGAAAATGTTTGATGCGAGGGGGAGGGAGCGCACTGCCACAGAGGAAAAAAAAAGGTGGAGGGCGTCGTTGGGGGATTCGCGTGCCAGTGCCTTGCCCCCGTCCTCACCAAGATGCAACCGTCCTCACGGGCAGATGAGGATGGTGGCGGCTCATGTTCTTCTTCTCCAGGCGGATGGATCTTCGATTGCAGATGCGGTGGCTTGATTGGAAAGAGCGGCAGTGGCGGAAGCGCTCCGTTGACGGTTAGGAGGGCGAGATTACGGCGGCAGCACACGTGAGGGAAGAAGCGGGGAGGCGGTGGCGAGGCAGAGATAAAAGAGGAGAAGAGGCGGCAGCGGCTTGCACCCCTCTCCTCCGAGTGGGAAGTTCCATCGCGGAGGAGACCGGGGTCGCCATGGGCAGATGCGATTACGGCGGCGGCGACGTGTGCGAGGAGAGGGGGAGGGCATGGGCGCACGCGATTGCGCAAGCC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0343100.2 | 6 | 14605200 | T | G |
| Osa06LNT0343100.2 | 6 | 14604834 | C | G |
| Osa06LNT0343100.2 | 6 | 14605244 | T | C |
| Osa06LNT0343100.2 | 6 | 14605414 | A | G |
| Osa06LNT0343100.2 | 6 | 14605419 | T | C |
| Osa06LNT0343100.2 | 6 | 14605442 | G | T |
| Osa06LNT0343100.2 | 6 | 14605480 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0343100.2 | osa-miR812p | Translation | 4.5 | 13.706 | 1 | 24 |
| Osa06LNT0343100.2 | osa-miR812s | Translation | 2.5 | 13.979 | 1 | 24 |
| Osa06LNT0343100.2 | osa-miR5799 | Translation | 2.5 | 13.979 | 1 | 24 |
| Osa06LNT0343100.2 | osa-miR5831 | Cleavage | 4.5 | 11.93 | 1 | 24 |
| Osa06LNT0343100.2 | osa-miR6251 | Translation | 5.0 | 16.884 | 1 | 21 |
| Osa06LNT0343100.2 | osa-miR156j-3p | Cleavage | 5.0 | 21.202 | 1 | 22 |
| Osa06LNT0343100.2 | osa-miR812a | Cleavage | 1.5 | 13.706 | 1 | 22 |
| Osa06LNT0343100.2 | osa-miR812b | Cleavage | 1.5 | 13.706 | 1 | 22 |
| Osa06LNT0343100.2 | osa-miR812c | Cleavage | 1.5 | 13.706 | 1 | 22 |
| Osa06LNT0343100.2 | osa-miR812d | Cleavage | 1.5 | 13.706 | 1 | 22 |
| Osa06LNT0343100.2 | osa-miR812e | Cleavage | 1.5 | 13.706 | 1 | 22 |
| Osa06LNT0343100.2 | osa-miR1435 | Cleavage | 4.0 | 16.638 | 1 | 20 |
| Osa06LNT0343100.2 | osa-miR1438 | Cleavage | 4.0 | 12.366 | 1 | 22 |
| Osa06LNT0343100.2 | osa-miR1439 | Cleavage | 2.5 | 9.06 | 1 | 21 |
| Osa06LNT0343100.2 | osa-miR1846a-3p | Translation | 3.5 | 20.391 | 1 | 21 |
| Osa06LNT0343100.2 | osa-miR1846b-3p | Translation | 3.5 | 20.391 | 1 | 21 |
| Osa06LNT0343100.2 | osa-miR812f | Cleavage | 5.0 | 13.668 | 1 | 24 |
| Osa06LNT0343100.2 | osa-miR812g | Translation | 4.5 | 13.979 | 1 | 24 |
| Osa06LNT0343100.2 | osa-miR812h | Translation | 4.5 | 13.979 | 1 | 24 |
| Osa06LNT0343100.2 | osa-miR812i | Translation | 4.5 | 13.979 | 1 | 24 |
| Osa06LNT0343100.2 | osa-miR812j | Translation | 4.5 | 13.979 | 1 | 24 |
| Osa06LNT0343100.2 | osa-miR1846c-3p | Cleavage | 4.0 | 20.391 | 1 | 21 |
| Osa06LNT0343100.2 | osa-miR2101-5p | Cleavage | 5.0 | 14.009 | 1 | 22 |
| Osa06LNT0343100.2 | osa-miR2864.2 | Translation | 5.0 | 11.382 | 1 | 21 |
| Osa06LNT0343100.2 | osa-miR2930 | Translation | 4.5 | 21.168 | 1 | 22 |
| Osa06LNT0343100.2 | osa-miR812k | Cleavage | 3.0 | 13.668 | 1 | 24 |
| Osa06LNT0343100.2 | osa-miR812l | Cleavage | 3.0 | 13.668 | 1 | 24 |
| Osa06LNT0343100.2 | osa-miR812m | Cleavage | 3.0 | 13.668 | 1 | 24 |
| Osa06LNT0343100.2 | osa-miR812o-5p | Translation | 3.5 | 13.379 | 1 | 21 |
| Osa06LNT0343100.2 | osa-miR812o-3p | Cleavage | 0.5 | 15.046 | 1 | 24 |
| Osa06LNT0343100.2 | osa-miR5160 | Translation | 5.0 | 16.698 | 1 | 22 |
| Osa06LNT0343100.2 | osa-miR5490 | Cleavage | 3.5 | 12.442 | 1 | 21 |
| Osa06LNT0343100.2 | osa-miR5490 | Cleavage | 5.0 | 15.212 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0343100.2 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0343100.2 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0343100.2 | 6 | gp6 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0343100.2 | 6 | qRS6-1 | Morphological trait | Shoot/Seedling | RZ667 | RG424 |
| Osa06LNT0343100.2 | 6 | qGY6-1 | Morphological trait | Seed | RZ667 | RG424 |
| Osa06LNT0343100.2 | 6 | qLVBSL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0343100.2 | 6 | qLVBTL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0343100.2 | 6 | qSL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0343100.2 | 6 | qTL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0343100.2 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0343100.2 | 6 | qHD-6-1 | Physiological trait | Flowering | RG424 | RZ667 |
| Osa06LNT0343100.2 | 6 | qPH2-6-1 | Morphological trait | Dwarf | RG424 | RZ667 |
| Osa06LNT0343100.2 | 6 | qTN2-6-1 | Morphological trait | Culm/leaf | RG424 | RZ667 |
| Osa06LNT0343100.2 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0343100.2 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0343100.2 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0343100.2 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0343100.2 | 6 | qPHw6-2 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0343100.2 | 6 | qSFWd6 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0343100.2 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0343100.2 | 6 | gw-6 | Morphological trait | Seed | C235 | G294 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|---|---|---|---|---|---|---|
| Osa06LNT0343100.2 | osa-MIR812b | 85.119 | 168 | 1 | 165 | 2.11e-42 | 169 |
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)