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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa01LNT0001800.1

GGTACTTTAAATTGGTCGTTTATTTACTGCAAATCTGTAGGTAGCAAATACAAATCCAATACCCTCTTTTACGGTTTAAATTACCACACACGGACACGCCAAGGCCCTATAATCACAACATAAAACAACATCACATCTCTTCTGATCGATCTAAAAAATAATCCCAATCCCAATATAATCCGTATATATGCAATGCACTTAACCGTTCTATGTACTACACGTATGAACGTATGAATCCCCCCCGATGATGGAGTTGGCTGGCTAGAGATCCATGTCGAGCACGAGTGGGCCATCTCCCTTGCCGACGTCGAACTGCTGGTACTTCATCTCGCCGGCGCCGGTGGTGAGCTGCACGACGTACTTGCCGTGGAACCCCCTGAACTTGAAGTGGCCGCTGCCGTCGACCTGCCCCCGCGCGTGCGACGTCCACTCCTGCCGGAGACCCACGTAGCGGTGGCCGGCCTCGTTGAGCTTCCCGTCGGCGTCGACGAGGTGCGCGTGGGAGCGCCACATGTTGCCCTGCATGAACCCCCACAGCATGATCCCCTCCACCGCCGGGTGCGCGAACGCCTCCCGGAGCACGATCTCCAGGTCGTCGGCGCGCACCGCCTCGTCCGCCGCCGACACGTCCAGCTCCGTGATCCACACGGGGAGACCCGTGACGGCGAGCCTGTCCAGCGCGTCGCAGATCACGTCGCCCACCGGGTGCGTCACGTGGCCCTGCACGCCGATGCCGCCCACCGCCGCGCCGCGCTTCTGCAGGTCGGTGACCAGCTCCACGTACCGCTCCGGCGTCGCGTTCGGGTCGTTGGCGCTCTCCACGTTGTAGTCGTTGACGAACAGCGCCGGCGACGGGTCCATCTGCGCCGTCTCCCGGAACATGCGCGCGTTGATGTCGTCGCCCAGCCTCTGCTGGAAGAAGGCGCCGTGGAGCATCTCGTTGTTCACCTCGTAGTGCGGGAACCTGCCGCCGTACCGCGTCACGAGGCTGCGGAGGCGGCCCTCCACGGCGGCGCGGAGCTGATCGCCGTTGAGCGCGCGGACCCACGGCTGCACGACGTTCTCGACGGCCCAGAAGATGCAGTGGCCGCGCACGGGCTTGCCGTGGCGGTCGCAGAAGGCGATGAGCTCGTCGGCGTCGGAGTAGCTGACCTGCCCCTGCACCGCCTCGGTGTAGTACCACTTGAGCTCGTTCTCGAGCACCGCCCAGTCGAAGTGCTTGGTGAAGAAGTCCACGAACGCCGGGTTCTGGATCGCCGTCTTGTTGATGCACGCGCCGATGGGGAAGCTGTTCTCCACCTGCACCACGCGGATCGCCGTGCCGCCCGTTCGCCGCCCCAGCTTGAGCACCACATCACGCTTGCGCACCTTGTCAGTTTTCTTCCTGAGGTGCCTGAGCCTCGCGATCTTGTTCACGGCGAATACCTGCAGGTCCATCACCTTGAGATCCACCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.205788
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0001800.1 1 1907387 T C
Osa01LNT0001800.1 1 1907938 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0001800.1 osa-miR167d-3p Cleavage 3.0 15.758 1 22
Osa01LNT0001800.1 osa-miR168a-5p Cleavage 4.5 21.816 1 21
Osa01LNT0001800.1 osa-miR168b Translation 4.5 20.149 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0001800.1 1 qFLL-1 Morphological trait Culm/leaf RZ543 RG532
Osa01LNT0001800.1 1 qFLP-1 Morphological trait Culm/leaf RZ543 RG532
Osa01LNT0001800.1 1 gp1a Morphological trait Panicle/flower RM1 R753
Osa01LNT0001800.1 1 nan Physiological trait Source activity RG532 RG472
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus