© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0344200.1
GTTCCACTAGTACTTTTCCTATCAATTCAACAACCTCCAAAATCAGCATCTGAATATCCACTTAAGCATATAGAAGATGAAGTAGAATACCAAATTCCAAACTCAAGTGTATGATTCAAATACCTCATTATTCGGTTGACCGCTTGACTATGTGAAGCACGAGGAGAAGCTTGAAAGCACGCACACAAACACACAGCAAATTCTATGTCTGGCCTAGAAGCAGTTAGATACAACAAAGATCCAATCATACTTCTATACTCCTTTTGATCAACAGCTTCATCTTCATCAGGATCCAACACAGCTGTAGAACCAATAGGTGTAGAAATTTGCTTGCAATTCTCCATCTTGAACCGTCTCAAAAGATCATTCGTATACTTCGTTTGATGCACAAAAGTACCTTGAGGTGTTTGCTTAATTTGCAATCCCAAAAAGTACGATAACTCATCCATCATGCTCATCTCAAATTCCCTGCGCATAGTCTCAGCAAAATCTACAACCAAAGCGTGAGTCAAACAACCAAAGATGATATCATCCACATAAATCTGAACGAACAGTTGATTATCACCATGCTTAAGAACAAAAAGCGTTTTGTCAACCTTTCCCATTATAAAACCTTTCGCAAGCAAAAAGTTCTTAAGCCTATCATATCATGCCCTAGGAGCTTGTTTCAAACCATACAAAGCTTTAGACAATTTAAAAACATGGTTGGAAAAATCAGGATTTTCAAAACCTGGTGGTTGTTTGACATAAACTTTCTCCTGTATAAAACCATTTAGAAAAGCACTTTTCACATCCATTTGATACAAATTAAAACCTTTTGAAGCAGCAAAGCCAACAAAAGTCTAATTGCCTCAATTCTAGTAACAGGAGCAAAAGTTTCATCAAAATCCAAACCCTCAACTTGAGTAAAACCTTGAGCAACAAGTCTAGCTTTATTTCTCACAATCAAACCATCCTCATTTTGTTTATTTTTGAAAACCCACTTGGTTCCAATAATGTTATGTCCAGAAGGTGGTTCAACTAAAGTCCAAACTTTATTTCTCTCAAAATTTTCAAGTTCTTCATGCATGGCGTTAATCCACGATTCATCAGTTAATGCATGTGACACATCTTTGGGTTCAAAAGAAGCAACACATGCAGAATTTGCACAAACATCATGAGTCCTTACCTTAGACCTTGTAGTCCGCTCACCTATATTACCAATAATTTGTTCCGGTGGATGTCGTCGTTGAATGTGCAAAGGAGCAGCAACTTCTGAAGTTGATCCACGTTCTGTATCCGTACTGGTCGAAGTTGTAATCTCCGGAGGACCATCTCGATCAGCATCAACAGATCCCTCAGCCGACGACCCTGGCCGGTCTGACCGCACGTCATGCGCCGGTTTGACCGGAGGTGTGCCGGCGGTCTGACCGGCCTGGCGCCCGGTCTGACCGGCCGAGCCGACCTCGTTGTCGTCGTCGTAGTCGCTCTCGTCTTCAAAAATACGACCATCCTCCTCCTGAACCTGTGACAGTGTACCTGCGATTTCATGTCTAGTACCGGGACTAGCCTCATCAAAAGAAACTTCACAAGTCTCCACGATTTTGTTAGTCCCCAAAATAAGTACACGATAGTCACGAGTATGTGCGGGGTAACCAAGAAACAATCCATCGGTAGAACGTGCCTCAAACTTATCCAAATTTCTAGATTTCAAGACAAAGCACTTGCAACCAAAAACACGCAAATGTGAAACTTTGGGTTGATGACCAAATCGAAGTTCATAAGAAGTTTTTCCAAGTTTAGATCTCAAGAAAACCCGATTTGAAATATAACAAGCAGTGTTAATAGCCTCAGCCCAAAATTTTCTAGGAGTTTTATATTCATCCAACATCGTTCTAGCCATCTCAACCAAAACACGATTTTTCCTTTCAACAACACCGTTTTGTTGAGGAACACGAGGAGAAAAAAATTCATGTTCAAGACCTCTTTCGTTGCAAAATTGTTCAAATGAAGCATTTTTAAATTCACCACCATTATCACTTCGAATTCTTTTTAAAGAACCAGGAAATTCAAGATCCAATCGAAGAAACAAACCACGAAAGTGTTGAAAAGCTTCGTCCTTAGTTGCCATAAAGAAAACCCAAGAATATCGGGAAAAATCATCAATAATATCCAACACATACCACTTTCCTCCAACAGATTGCACTCTAGCTGGACCAACAGTGTCCATATGTAATAGCTGTCCCGGTGCATCCGTCATCACAGAAACAATAGGAGCATGTGGAGTAGAAACCATCTTAGCATGACGACACGGTATACAAACCAAATCAAGATCTTTCTTAAGTTTAGGCAAACCACGAACAAGATCCAAACCACTTAACCTAGTGAGATGATCAAAACCAACATGTCCAAGTCTACGATGCCAAAACATCACATCTTTATCAAACTTAGCAACCAAACATGTTATCACAGGTGAAACAGGATTTTCAAAATCAGCTTTAAACACTCTTCCATAGTGAGAAATATTCAGCACAGAATCACCACAAGAATCAAAAACTTTACTTCCAGTTTTCTTAAAGTGAACCTCAAAATTTTCATCAACAGTTTGTGAAACTGAAAGCAAATTGTACTTTAAGTCTTCAACCAAAGCTACATTCTTCAATTCAAATTTTTCATTTACCTTAACCAAACCTGTAGCGAGAACGACACTTGTAGCAGTATCACCAAAGATAATCGATTCAGTCTTAGATGCCTTCTTTAGGGAGGAGAACCAATTTTTATCACCGGTCATGTGCCGCGAACAACCAAAATCCACAATCCACACGTTCTCCTTCCTTGCCACCAAAGCCTACACACAAGCAGAAGTCGAAGCCTCAGTACTGGGGTTAGATGATAATAAAAATTTAGGAATCCAGTACTGAGACACA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0344200.1 | 6 | 16236125 | A | T |
| Osa06LNT0344200.1 | 6 | 16236364 | T | C |
| Osa06LNT0344200.1 | 6 | 16236758 | T | C |
| Osa06LNT0344200.1 | 6 | 16236787 | T | C |
| Osa06LNT0344200.1 | 6 | 16236788 | A | G |
| Osa06LNT0344200.1 | 6 | 16236923 | A | G |
| Osa06LNT0344200.1 | 6 | 16236207 | G | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0344200.1 | osa-miR5143b | Translation | 4.5 | 7.762 | 1 | 24 |
| Osa06LNT0344200.1 | osa-miR6254 | Translation | 5.0 | 19.5 | 1 | 21 |
| Osa06LNT0344200.1 | osa-miR7692-5p | Translation | 4.5 | 15.204 | 1 | 24 |
| Osa06LNT0344200.1 | osa-miR395u | Cleavage | 5.0 | 10.026 | 1 | 21 |
| Osa06LNT0344200.1 | osa-miR159a.1 | Cleavage | 5.0 | 10.825 | 1 | 21 |
| Osa06LNT0344200.1 | osa-miR159b | Cleavage | 5.0 | 10.825 | 1 | 21 |
| Osa06LNT0344200.1 | osa-miR168a-5p | Cleavage | 5.0 | 20.64 | 1 | 21 |
| Osa06LNT0344200.1 | osa-miR810b.1 | Translation | 5.0 | 14.374 | 1 | 21 |
| Osa06LNT0344200.1 | osa-miR1866-3p | Cleavage | 3.5 | 8.998 | 1 | 22 |
| Osa06LNT0344200.1 | osa-miR2868 | Cleavage | 3.5 | 10.74 | 1 | 20 |
| Osa06LNT0344200.1 | osa-miR2873a | Cleavage | 3.5 | 11.667 | 1 | 24 |
| Osa06LNT0344200.1 | osa-miR2873b | Translation | 5.0 | 11.038 | 1 | 21 |
| Osa06LNT0344200.1 | osa-miR5081 | Translation | 2.0 | 11.57 | 1 | 22 |
| Osa06LNT0344200.1 | osa-miR5143a | Translation | 4.5 | 7.762 | 1 | 24 |
| Osa06LNT0344200.1 | osa-miR5161 | Cleavage | 4.0 | 11.311 | 1 | 20 |
| Osa06LNT0344200.1 | osa-miR5161 | Cleavage | 5.0 | 15.673 | 1 | 20 |
| Osa06LNT0344200.1 | osa-miR5340 | Translation | 5.0 | 14.215 | 1 | 23 |
| Osa06LNT0344200.1 | osa-miR5492 | Translation | 5.0 | 11.813 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0344200.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0344200.1 | 6 | gp6 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0344200.1 | 6 | qRS6-1 | Morphological trait | Shoot/Seedling | RZ667 | RG424 |
| Osa06LNT0344200.1 | 6 | qGY6-1 | Morphological trait | Seed | RZ667 | RG424 |
| Osa06LNT0344200.1 | 6 | qLVBSL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0344200.1 | 6 | qLVBTL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0344200.1 | 6 | qSL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0344200.1 | 6 | qTL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0344200.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0344200.1 | 6 | qHD-6-1 | Physiological trait | Flowering | RG424 | RZ667 |
| Osa06LNT0344200.1 | 6 | qPH2-6-1 | Morphological trait | Dwarf | RG424 | RZ667 |
| Osa06LNT0344200.1 | 6 | qTN2-6-1 | Morphological trait | Culm/leaf | RG424 | RZ667 |
| Osa06LNT0344200.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0344200.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0344200.1 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0344200.1 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0344200.1 | 6 | qPHw6-2 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0344200.1 | 6 | qSFWd6 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0344200.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0344200.1 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0344200.1 | 6 | gw-6 | Morphological trait | Seed | C235 | G294 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)