© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0344700.2
TCTCAATCGGGCCTAAAATTGGTGCCCGTCACAGATGGACCCGTTTGAGATATGGAATGTTATCTTAATCGGGCCTAAACTACGGCCCGTCACTGATAGGTGTCATCCGTGATGGGCTTAAGTTTTATGCCCATCTAACATGTCTGTGCGACCATATCTCAATCGGGCACTTTTCGGCCCGATTGAGATGACTTCCTTGTGACGGCCCGCTATTTCTAAGCATATTAGAGCCCGTCACAGATAGAAGGATCTGTACTAGTGGTGCCCTTCCACCGCCGCTGGCACCGCAGTCCACCGCTGTGACCGCCGGAGCCGAGGTCTTCCCCATCCGCCGCCGCTGCAGTCAAGCGCAGACCCCGACGGAGCCGAGGTCTTCCACATCCGCCGCAGTCCAGCGCTGCCCCCTGATAGAGCCGAGGTCATCCCCAGCCGCCACCGCACTCCAAAAAAGGTGATTTTTCACGTGCAAAGCACGTCAATATATATTGAATGAAGTACATTTTTTTTGATAACTGGCAAATTGAATCACCTTTTCCGTCGAGCGCGCGCGAGCAAACGCCGCCGAGATCATCGCCGCTCTCGTCGCCTTTTCCGTCACTCTCATCTCCGCATCTCTCGCCAAATCCCGACAGGATAATGGTGGCAAGCGAGAGAATCTTGTCCAATTCTTGGTACCAGTTCATCGAGTGAGCACATGTTCATGATTTATTTTCCAAGTTGAAGATCCACATGAGCAGCAGAACATTGTTTAGAAGGAAGACTGTAGGTACCACATCACCATAAAACCTTCTCTGCACTTATGAAATAACCAAGGATGAAAATAAGGCTAGCAGAACATTACTACAGTCTATATCAATCAAATAATACTTGACTGAGATTATTTCAAGTAGTATCTTTGGACAATGTAGAAGCTTGTGCAGGGGAAAACTCAGATGGAACGAAGTTGGTGGAGGATGACCAAGAACCTGCTTTTGTGTGGAATTGAAGCATTTCCAAGTTTATGCATGTGCAATGCACGTTTCACATGGTTTATCACACAAAATATTAAATACACTGGAATTTATCATGTTTGCCCATAATATACATCATACTAAACATACCCGTTTAAGAAATGTACCCTAACGTGATATGGTATCCTTTCGGTATCCTTTCAAGTTTGTCTTTTCACCTCAGACTCAGATTTTCCACCATCTGGAACAATGGGAGCTTTAATAGATTTCACTTCTCTGAAATAGCATAGAGTTAGAAGCAGCTTTTGAGAAATTGTGAGGAACAGGGTCGTTGACCATTAGATGTGTATATCAAAGAAAACCAGAAAAAGGCAGCAAATGCAATTGCAAAGATTCAACTAAGTCTAGGAACTTCATGTGTACTTCATCTGCCGTTAACTTTTCCTCTTTGAAGTGACTGCGTGTGCATTAACAAACTTACTAATCAAAAGGTTGCATACCTGACTTATTCCAGTGTTAGAGACCCACTCAACAATGCAATTTTAGGAGTAGGAGTACCAAATCCAACACAAGGAACAACCGAGTCTGTTACAATAGTGGAGGGGTTTTGAGGTGGAAAATGGAAGGATACAAAGGCTAGTAGGTTCTACTAGCTTCTAGACAAGTAGAAGAAGAGGGAGAGTAAAGATCGACAAGGAACCAAGCCCGGTTCCAGGTCGCCGCCGCCGCCGTCGCCGCCGAGAAGCCCCTCAACCGGTTCTGTTGTTCTCTGTTCGATCTCCTCTCTGGTGCTGCTCCTGCTGTTTATATGTGCTCCTGATTTGCTTGCTTGGGCCTTGCTTTGAAAGTGGTTGACAGCCCACAGGCAGCCCATTTGGGTTCCTAACAATCTCCTCTCCTTAAATTTCGGCTTGTCCCCAAGCCGATGCAAAGTTTCACCAGAGCCACCGGGGTCCCACTGTTTATGTAGATTCTTGATAGGAACTGAACACCACATGATAACATTAAGGAAATTGTCAGAAATGTGCTCCTCTGCAGAATAAAGGTCAAGAATATGTGTCCCAGATTGAAGTGATCTTGATAGCTGACAAACAATTGTGAACTTAGCATCAACACGATCATTCTTCCAATCATTTCAGATATCCATGTCTTGAGCTTGTTCCTGATCAGTAAGTGCACAATTATTGTTTTGTGATACTGATTCAGTTTACTGCAACAGACCATGGCAAAACTTGAAGTCTTGTACTTGTCAGCAAGAGCAATACATGAGGATGGTAATGATCCTGAAGTCCACTTTTCTGTATTAATTACAGACCAATGTAGGTCCAGCATGCTGGTAAAAATCATCACTGAATGCTCCAGTAAGCTCATTGTTTCTTGTATGATTTTTCTTGTATCACTATTCCACTCCATGCTTGTGTCAAAACTGAAAGCAGCATGTCGATCACACAAAATTGTAATGCAGGCATTTGTTGATTGTGAAATTGGGAACTTAAGGACATCTCTGTGTAAACATATACCTATTTTCGAAAAGCACACCTCAAGATCAATAGTATTACCAGAGTATTTTTCACTTAAGCTGCCAATGAGCACCCTCAATAAAAACTCCAGTACTTGTACTTCAAATTTAGGAGGATTGATGTTCCTTGCCAGTAACCAGAAGAGCACACTGACTTGCAACTCAAAGAGCTCCCTGCCAACAACGAATTTCTTGGCTTCTTTTGGAGACAAGCATTTCAATAGTAGTCAAGTGCACATCTAATAGTTCTGAGAATGAGTTGAATATTGTTTCTGTTGTCGCAGAGCCTGATTTCTTTGGATTACATCCTTCAGGGATTGTAACATCAATAAATATCATAGTGGATTTCCCTTGGATGTCATCCAGCTCACTACTGATGCTTGGTACATGTCTCATTGATTTGATCATCACACTCCAAAAAATCTTATGCACTGCAACAACAAGATTCCAATCAATGTGTACTCCATCTATTGTAAACACAAGGCCAAATTTTGATGGATACGTTAGAGGCATTGGCTGAGTTGGGGGTGGCCATGGTGGCATCCAGTGTTCCACCGTCCCACAGAAATTGAATCCCGGCCATGGCGAAGGCCTTAAGTCTCTACCTCTAATCACTCCATCTGACCAAGGAGGTGGCCATGAGTTAACATCAAGAGCGTTTGTAGCCAACATGTCATGCCCAAGGAACTGCACCGAATACTTAATGGGTATTGGTGTGTTCCACTTGATGTTAGCCATCATACTTGATGAGAAAAAGTCCATGAACTGAACGGAGGTCGGAACATCCTTGAATGCATCTGTCCAGGTCTGGAACACAACCATAGCTTGACCGGTGTCACCAATGGCATCGAGGACAACCGTCAAACACTTGGTGTGCATCACCTTGGAATGGTCAGAGGTGTCGCTGTACGTGGCATCAATAGCTTCCTGAGCAGCTACCAACTCCATAGAGACAGTGGCTGTGCTAGCGTAGGTCACCTCCGCAACCATGGTGAGATTGGACTCGGTGTCGGGGATGGAGCATTTCATCGAACACATGGTGGGCGTGACCTCAAGAGAGTCCTTGGCGATGATGTAAGGGTCATGAATCTTGTCCTCACCACCCCCAAGCTCCAGGATGATCGTTGGAGTAGACCCCTCGTCGTCGTAGATGGATCTCGCTGTTCTGCTCGGGCTGCTGCCATTAGGGCACTCTGTCGAACAGGTGGTGAGCGTCACCTTGGACTGCTCATCCCCAACCAAAAACTGTAGGTCTTCAGCATTCTTCTGGATTTCAGGCATCCACAATTCTACCGCCGCCTTGAGAGACTGGTATTCAGCTCTCCTCTGATCTGCCTCCACCTGCCTCCGTTCAAACTCCTCCATCCGCCTCAAAATCAAATCCAACTTATCCTCACCTTCCATGGATGCTTGCTTAGTGAATTTGGTGGGGCTTGGTGGCTCTGATACCAGATTTGTTAGAAAACCCACTCAACAATGCAATTTCAGGAGTATGAGTACCAAATCCAACACAAGGAACAACCAAGTCTGTTACAATAGTGGAGGGGTTTTGAGGTGGAAAATGGAAGGATACAAAAGCGTGATACCAAGCCCGGTTCCAGGTCGCCGCCGCCGCCGTCGCCGCCGAGAAGCCCCTCAACCGGTTCTGTTGTTCTCTGTTCGATCTCCTCTCTGATGCTGCTCCTGCTGTTTATATGTGCTCCTGATTTGCTTGCTTGGGCCTTGCTTTGAAAGTGGTTGACAGCCCACAGGCAGCCCATTTGGGTTCCTAACATCCAGGCTGCCGCCTAGGGCCATCGAGTTGTCGGATCCGTCGCCGCCGGTGGGCCAGATCCGGCATCACGCTCTTCATCCCCTACAGTCACTCGAGCTTGGAGGAGCCAATCCGGTTGGAGGCGACGCAGATCGAGTCCTGGGGTAGCGGACGACGACCGATTGGTGATGACAGCCGACACCGAGTGATGACGACGGTTCTTGAGGCGGAGTAAGGAGGTGTTGCTGCAAACCCACACGTCGCCATCACCGGTGGTCGTGGCCGCGCGTCACTGGAGCAGCGGCAGCAGAATGTGCGTGCGGGCGCGGAAGGGGACGACCTCGGCTCCGACGGCGAAGGATGGGGAAGACCACGGGTCCGGTGGTGGCTGGGGAGGACCTGGGCTCTGGTGGGGGCAGTAGTGGAGTGCAGCGGCGGTGGCGGAAGGGACGACCTCGGCTCCAGCCGCGGTGAATGGGGAATACCACGGCTCCGAAGGTGGCTGGAGAAGAAATCGGCTCCGGCGGAGGCAGTGGTGGAGTGAGGCGGCGGCACCAGTACACGTGAGGAGGAGGAGGGAGAAGGAGCGAGTCGCGCCGGCGGGGGCAGCGGTGGATTGAGGCGGAGCGGCGCGTGGTGGCGGCAGACCGGCAGTAGCACACGCGAGGAGGAGTGTGAGTCCCGCGTGGTGGTGGTGGCAGCAAACGCGAGGAGGAGGAGCGCTCATT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0344700.2 | 6 | 16437293 | G | T |
| Osa06LNT0344700.2 | 6 | 16437595 | T | C |
| Osa06LNT0344700.2 | 6 | 16437713 | A | T |
| Osa06LNT0344700.2 | 6 | 16438224 | A | G |
| Osa06LNT0344700.2 | 6 | 16438250 | T | G |
| Osa06LNT0344700.2 | 6 | 16438309 | T | A |
| Osa06LNT0344700.2 | 6 | 16438737 | C | T |
| Osa06LNT0344700.2 | 6 | 16439302 | C | T |
| Osa06LNT0344700.2 | 6 | 16441610 | G | T |
| Osa06LNT0344700.2 | 6 | 16441854 | T | G |
| Osa06LNT0344700.2 | 6 | 16442897 | A | G |
| Osa06LNT0344700.2 | 6 | 16443043 | T | G |
| Osa06LNT0344700.2 | 6 | 16443258 | G | C |
| Osa06LNT0344700.2 | 6 | 16443287 | G | A |
| Osa06LNT0344700.2 | 6 | 16444212 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0344700.2 | osa-miR5540 | Translation | 4.0 | 23.482 | 1 | 21 |
| Osa06LNT0344700.2 | osa-miR395c | Translation | 4.0 | 21.6 | 1 | 21 |
| Osa06LNT0344700.2 | osa-miR172b | Translation | 5.0 | 9.644 | 1 | 21 |
| Osa06LNT0344700.2 | osa-miR171h | Translation | 4.5 | 19.832 | 1 | 21 |
| Osa06LNT0344700.2 | osa-miR443 | Cleavage | 3.0 | 19.577 | 1 | 22 |
| Osa06LNT0344700.2 | osa-miR529a | Cleavage | 3.5 | 21.854 | 1 | 20 |
| Osa06LNT0344700.2 | osa-miR395o | Translation | 4.0 | 21.6 | 1 | 21 |
| Osa06LNT0344700.2 | osa-miR395o | Translation | 5.0 | 16.983 | 1 | 21 |
| Osa06LNT0344700.2 | osa-miR1429-3p | Cleavage | 5.0 | 16.364 | 1 | 21 |
| Osa06LNT0344700.2 | osa-miR1847.1 | Translation | 4.5 | 16.567 | 1 | 21 |
| Osa06LNT0344700.2 | osa-miR1850.3 | Translation | 4.5 | 21.245 | 1 | 22 |
| Osa06LNT0344700.2 | osa-miR1850.3 | Cleavage | 4.5 | 12.162 | 1 | 22 |
| Osa06LNT0344700.2 | osa-miR2864.1 | Translation | 3.5 | 16.334 | 1 | 21 |
| Osa06LNT0344700.2 | osa-miR2864.1 | Translation | 5.0 | 21.327 | 1 | 21 |
| Osa06LNT0344700.2 | osa-miR5513 | Cleavage | 5.0 | 17.908 | 1 | 21 |
| Osa06LNT0344700.2 | osa-miR5513 | Cleavage | 5.0 | 11.822 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0344700.2 | 6 | qGY6-1 | Morphological trait | Seed | RZ667 | RG424 |
| Osa06LNT0344700.2 | 6 | qLVBSL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0344700.2 | 6 | qLVBTL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0344700.2 | 6 | qSL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0344700.2 | 6 | qTL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0344700.2 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0344700.2 | 6 | qHD-6-1 | Physiological trait | Flowering | RG424 | RZ667 |
| Osa06LNT0344700.2 | 6 | qPH2-6-1 | Morphological trait | Dwarf | RG424 | RZ667 |
| Osa06LNT0344700.2 | 6 | qTN2-6-1 | Morphological trait | Culm/leaf | RG424 | RZ667 |
| Osa06LNT0344700.2 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0344700.2 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0344700.2 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0344700.2 | 6 | qPHw6-2 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0344700.2 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0344700.2 | 6 | gw-6 | Morphological trait | Seed | C235 | G294 |
| Osa06LNT0344700.2 | 6 | qSFWd6 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0344700.2 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0344700.2 | 6 | gp6 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0344700.2 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0344700.2 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0344700.2 | 6 | qRS6-1 | Morphological trait | Shoot/Seedling | RZ667 | RG424 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)