© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0345100.1
GAACTCCGTGATGCCGCCTGACTTTTACTAGCACCAAATGTACAAGTGTCCCCAAAAGCATGGTTTTAAGAGCGATGACAGTATCCAACTCCAAAAGTTGTGCCTCCACTCCACCGACGGCTATACCCATCAGAACTTCAATTCAGAATGCTTTACAAGCAGAAATTTGGGCAGGCAGGTGAGAGCTATTCTGATGATTCTCCCCTTCCTCATGGGTTTACAAGCAGATCCTGCAGCTGTCAACTTGGCAGCTCAGAGCTTGTAGGAGCAGTTTGTCAAATTCGACCATTCTCTTGTAGCCCAGCCTAAGAACTAACCAAGAACCAAAATTATCCCCAAGAGCCCAGCGGATAACCCGGCTTTCTACCTAAACTATACACGGCAGTATCGCATCTTTGCAGACCTACCTACCATAGTACCCAGTACAGTACCTTCCAAGTTTCCTTCTCTTGTGGCATAACCGGAGAAGACAATTGAGAGCTATGTTTTCCGGATGCACACCAACCTTCCACATTCCAAGGCCAGCTCCCATGGCAGCCGCCTGCAAACTATGAGGTGGCGACGCCAACCGCATTCCGAGGGTGGTCTGGTACTGCTGGCTCGGTTGACAAGACTTCAACAGGGTGCTCCGCTGTTGCTGACACTGGTGTTGTTGGATCTCTCATGTGGTTGTTGTCTTTAGCTTCCTCAAACAACCGAAGAAGCAGAGCTTGCATTTCCTTTCGCAGTGCAGAAGCCTCTTCACGTTGGAACCACCCTTCGCCAAACATATTAGATGAGTCCTTGTTGTTAAGCCTTTCAGGTGCTTCCTCGATAAAGCGTCGCATATAGTACAGAACAAAGACACCACAATCGTATTCATTGTCCTGCTGTGGAACTGTAACTGCTTTCTTCTTAATTTTCCGAGGAAGGTTCTTCCACACTGATTCATGTAGATGACAATCTTCTAAAGAACCAGTTTTATTCAGGTAGTTCCATTCTTCTTTAAGGAATCTCTCAACGGTGCTGAAAATAAATCTGCTGCTATGAAACTTCAGTGAATCCAAATGAAATATGGTGGGCCCTGATTGGTCTTCCTTTGCAGGCATACATATAATGACCAAGCTCCAGTGTGCGTCTGCATGCACAGGAATTATTATGTATGCCTTTTTAAATATATCTACACCTTTCCACCATCTTCTCAGATTCAAGAAATAAGCATCATTGTCCACCTTTGATGTCAAGGCTTCAAGTTTGCTGAAGAAGTATGTATTGAAAATATGATACTTGCCTCCAAGCCTACTTGTCGATGGCATTTGTCCCATTAGGTACATAATGTAGAAGTTCAGTATAGGTGAGGACAACAATGATTCAGGCTCAAGACACTTCATGTCAGAATAAGAAAGCTCAATAGAATTAGGGGTGTCCCATGAAGGATAGTGTATCTTCATTGCATCACATGCAGAGGATGTTTTTTCTGCAGAGTCTGAAATGCAAGTATCTCCATCGAGTAGAACCACCTCTTCAACCACCTTTCTTGATCGCAATCGCATTGAAAAGGTAGGTGAAAATTCTCCATTCCTTTTCCTAGAAGTGTGGGCATCTTTGCATATCCTACTGTAGCCATTATCCTTGCCATCATCAGCAGCATAGGAATCTTCCTCTTCACACAAGATCCCCTCATTATCTGTTGAAGTTTTTGGGTCGCCAATGCATGCACTTGTTTCCAAATGAGATACATCAACGCCTGCCTCTTCATCTATCCCAAAGGAGGACCGAAAATCTGATATGGTTACTGCTTGTTGTTTAACTGATGATTCTGCACATCCCGATTGAACTACCCTTGCGCATCTGTCATCATCCGTTGCTGCCTTACGGCGATCAATCTCGCGGACGATGGCGTCTAGCAAGCGGCGAAACTTGGCCCCGCGGTCCTTGAGCCTTCGCTCGATACCCCCACTGAGCTCCCCCTGAATGCGCCGCGACTTCTCCAGCAGCTCCACGTCTGAGAACCTGCGAAGCTCGGTGTCATCTCCGACGCCGTCGGCCCCGTCCTCGCCGCCGGCCATAGCATTCACGGCGGCCAGGAGCAGGAGGCGGCGCGGATTCCCCTACTCTACCCCCTAC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0345100.1 | 6 | 16733350 | C | T |
| Osa06LNT0345100.1 | 6 | 16733444 | G | A |
| Osa06LNT0345100.1 | 6 | 16735887 | A | G |
| Osa06LNT0345100.1 | 6 | 16736944 | A | G |
| Osa06LNT0345100.1 | 6 | 16737613 | C | A |
| Osa06LNT0345100.1 | 6 | 16735796 | A | G |
| Osa06LNT0345100.1 | 6 | 16737905 | A | C |
| Osa06LNT0345100.1 | 6 | 16738485 | G | T |
| Osa06LNT0345100.1 | 6 | 16738689 | T | C |
| Osa06LNT0345100.1 | 6 | 16739591 | C | T |
| Osa06LNT0345100.1 | 6 | 16739778 | A | G |
| Osa06LNT0345100.1 | 6 | 16740308 | A | C |
| Osa06LNT0345100.1 | 6 | 16740663 | T | G |
| Osa06LNT0345100.1 | 6 | 16741127 | C | A |
| Osa06LNT0345100.1 | 6 | 16741378 | T | G |
| Osa06LNT0345100.1 | 6 | 16742437 | A | G |
| Osa06LNT0345100.1 | 6 | 16742860 | A | G |
| Osa06LNT0345100.1 | 6 | 16743136 | A | T |
| Osa06LNT0345100.1 | 6 | 16743180 | T | C |
| Osa06LNT0345100.1 | 6 | 16743181 | A | G |
| Osa06LNT0345100.1 | 6 | 16745240 | T | C |
| Osa06LNT0345100.1 | 6 | 16735703 | T | C |
| Osa06LNT0345100.1 | 6 | 16738747 | C | T |
| Osa06LNT0345100.1 | 6 | 16734447 | T | C |
| Osa06LNT0345100.1 | 6 | 16734486 | T | C |
| Osa06LNT0345100.1 | 6 | 16734573 | T | C |
| Osa06LNT0345100.1 | 6 | 16734603 | G | A |
| Osa06LNT0345100.1 | 6 | 16734707 | C | T |
| Osa06LNT0345100.1 | 6 | 16735025 | C | T |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa06LNT0345100.1 | DTM_#DNAt_MULE_japo_Os0378 | Chr6 | - | 16734250 | 16735184 | 934 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0345100.1 | osa-miR444a-5p | Cleavage | 3.5 | 17.999 | 1 | 21 |
| Osa06LNT0345100.1 | osa-miR1424 | Cleavage | 4.5 | 11.401 | 1 | 21 |
| Osa06LNT0345100.1 | osa-miR1442 | Translation | 4.5 | 12.55 | 1 | 20 |
| Osa06LNT0345100.1 | osa-miR1876 | Cleavage | 4.0 | 16.806 | 1 | 24 |
| Osa06LNT0345100.1 | osa-miR3981-3p | Cleavage | 5.0 | 15.991 | 1 | 21 |
| Osa06LNT0345100.1 | osa-miR5144-5p | Cleavage | 3.0 | 12.038 | 1 | 21 |
| Osa06LNT0345100.1 | osa-miR5492 | Cleavage | 5.0 | 12.781 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0345100.1 | 6 | gp6 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0345100.1 | 6 | qRS6-1 | Morphological trait | Shoot/Seedling | RZ667 | RG424 |
| Osa06LNT0345100.1 | 6 | qGY6-1 | Morphological trait | Seed | RZ667 | RG424 |
| Osa06LNT0345100.1 | 6 | qLVBSL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0345100.1 | 6 | qLVBTL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0345100.1 | 6 | qSL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0345100.1 | 6 | qTL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0345100.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0345100.1 | 6 | qHD-6-1 | Physiological trait | Flowering | RG424 | RZ667 |
| Osa06LNT0345100.1 | 6 | qPH2-6-1 | Morphological trait | Dwarf | RG424 | RZ667 |
| Osa06LNT0345100.1 | 6 | qTN2-6-1 | Morphological trait | Culm/leaf | RG424 | RZ667 |
| Osa06LNT0345100.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0345100.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0345100.1 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0345100.1 | 6 | qSFWd6 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0345100.1 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0345100.1 | 6 | qPHw6-2 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0345100.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0345100.1 | 6 | qSPN-6 | Morphological trait | Panicle/flower | C235 | G294 |
| Osa06LNT0345100.1 | 6 | gw-6 | Morphological trait | Seed | C235 | G294 |
| Osa06LNT0345100.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)