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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0346000.1

GCGCACACCCGAGGAGAGGAAACACGGGGCAGCACTGTGCATCAATTTGGGAATAGAGAGAAGGGAGACACGAATACAAATTGAGAAAATTTTAGGAATTTGGAAGTAGAGAATTAGAGATAATGGATACACAGAAGTCCCGTACGAATTGAGAATAAAATGCTTACACATGCACACACAGATGACAAATCTATTGTCTTTTTGTTTTAATAAAGACATACATCAGATCCATAAATCAAAAGAGAGCAGTTACATGATTCATTCCAATTCCCAAGATCAAGCGGTAGAACCAAATCAAAAGATTGCATGTGGCTGTTGTGCAGCTCTCACGCTGTGCGTTGCATTGGCAGGCGGCGACTCGGCCGATGAGCAAGGCGCACAACGGCAGAGGGTCAGGGCGCGGCGCGGGAGCCTGAAGGCGTCACTCCTCGGTGACGACGACGGAGCTTTGAGGCGGCGATGGCGTGGGGGCGGGCGCGCAGCCTGGAGGCACGTCGCTGCCTCGCTGGCGTCCTGGCGGCCTCCCTCGCCCTGGCCGATCGGACTTGTTCAGAGAAAGAGAGGAATGGGGGAATTGGGGATCAGTGGATAGAAAGAAAAACGCGATGTGTTCTTCTCTGTGCGCCTGTGTTTT

Coding Potentia
Explanation CPC Score
noncoding -1.06823
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0346000.1 6 17981780 G A
Osa06LNT0346000.1 6 17981924 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0346000.1 osa-miR2118a Translation 4.5 12.412 1 22
Osa06LNT0346000.1 osa-miR2118b Translation 4.0 12.412 1 22
Osa06LNT0346000.1 osa-miR2118c Translation 4.5 12.412 1 22
Osa06LNT0346000.1 osa-miR2118e Translation 4.5 12.412 1 22
Osa06LNT0346000.1 osa-miR2118f Translation 4.5 12.412 1 22
Osa06LNT0346000.1 osa-miR2118g Translation 4.0 12.412 1 22
Osa06LNT0346000.1 osa-miR2118h Translation 5.0 12.412 1 22
Osa06LNT0346000.1 osa-miR2118i Translation 4.5 12.412 1 22
Osa06LNT0346000.1 osa-miR2118j Translation 4.5 12.412 1 22
Osa06LNT0346000.1 osa-miR2118k Translation 5.0 12.412 1 22
Osa06LNT0346000.1 osa-miR2118l Translation 4.5 12.412 1 22
Osa06LNT0346000.1 osa-miR2118m Translation 4.5 12.412 1 22
Osa06LNT0346000.1 osa-miR2118n Translation 4.0 12.412 1 22
Osa06LNT0346000.1 osa-miR2118p Translation 5.0 12.412 1 22
Osa06LNT0346000.1 osa-miR2118q Translation 4.5 12.412 1 22
Osa06LNT0346000.1 osa-miR2118r Translation 4.5 12.412 1 22
Osa06LNT0346000.1 osa-miR2873b Translation 5.0 12.113 1 21
Osa06LNT0346000.1 osa-miR812n-5p Translation 5.0 17.82 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0346000.1 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0346000.1 6 asv6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0346000.1 6 tgw6.1 Physiological trait Source activity RG264 RM3
Osa06LNT0346000.1 6 gp6 Morphological trait Panicle/flower RZ667 RG424
Osa06LNT0346000.1 6 qPHw6-2 Resistance or Tolerance Other soil stress tolerance RG424 RZ667
Osa06LNT0346000.1 6 qSFWd6 Resistance or Tolerance Other soil stress tolerance RG424 RZ667
Osa06LNT0346000.1 6 ph6 Morphological trait Dwarf RZ667 RG653
Osa06LNT0346000.1 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
Osa06LNT0346000.1 6 qLVBSL6-1 Morphological trait Panicle/flower RZ667 RG424
Osa06LNT0346000.1 6 qGY6-1 Morphological trait Seed RZ667 RG424
Osa06LNT0346000.1 6 qRS6-1 Morphological trait Shoot/Seedling RZ667 RG424
Osa06LNT0346000.1 6 nan Physiological trait Eating quality RM253 RM162
Osa06LNT0346000.1 6 qLVBTL6-1 Morphological trait Panicle/flower RZ667 RG424
Osa06LNT0346000.1 6 qSL6-1 Morphological trait Culm/leaf RZ667 RG424
Osa06LNT0346000.1 6 qTL6-1 Morphological trait Culm/leaf RZ667 RG424
Osa06LNT0346000.1 6 qHD-6-1 Physiological trait Flowering RG424 RZ667
Osa06LNT0346000.1 6 qTN2-6-1 Morphological trait Culm/leaf RG424 RZ667
Osa06LNT0346000.1 6 qPH2-6-1 Morphological trait Dwarf RG424 RZ667
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus