© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0346100.1
GTAGGATCAAATGATAATTTTAATGTCAAAATATACACTCTCTACAAGTATAAAACTCATTTATCTTTTCTACAAAACAATCAAGAATGGAAAGAAATGGCTTTCCAGGTCCTTCAAATTCAACGAGCAGGCATGCAGTGTGCATATACTAGATCTACACTAAGCAAGAGAAGTCTTAGCAGTCATGAGATACACCATTTGCTTTTTTGGTATCACTGTTGTCTTTGGTTGCCAAAAGTGGTTCAGTCTCCTTTTCTGGCATCTGTGAAACTGGCAGTGGATCATTTGTTGCCTTCTTCTTGCCCTCCTTCACTGAGAAGTAGGAGTACAATCCCATCCCAAATATGGCGATCAAAATTCCTAATATGTTCCTTGCGTTGAAAGGATCGTGTAACAGAATGTATCCAAATGAGAGAACGAGACATGTCTTAAGGTGGCCTAGCACCTGGTATGTAACTGGAGATGTTGTTCCAATCACAAGAAATGTGCTGAAGTTCACAGACACCGCAATCAAACAAGATAGCATGATGAAACCCAAAACTGGAGTGGTGTACTTGTGGGCGAAGACACTGCGGTTCGTAAGGAGTTGATCTACAAAAGGGCCAGTCGCAAACAAAATTGCTGCCTGGTAAGGTGCAGATTGGTAGAGTAACTGCGTTGAGGATACCTTCAATCTCTTCTGTATTGTATTTGTGAGAATTTGCCCAACACAAGTGGTCGCGATGGCGAGTCCAGAAAGGACGGATCCAAGTAGATTTAGCTTGAGATCAGTAACTGAAGCAATGCCCACTCCAAGAAGTAAGACCAGTAGAGAAAGCTTGATACTCTCGCTGAATCTTTTCTTCAGGAAGATTGTCTCCAACAGCACAGTGAAAGGTATGATCGCCAATTTTGTCATCTGGTAGAATCCAATGGAGTTGAATCCTAAACTAAGGTTGAGAAGGCCAATTGAGGTGCCATTCAGCAACCCAAAGAGGATCACTGTTTGCCCATCAATTGCCTTTGGTTCAAAGAAATGCAAGCGTTGTGCCACATGGAGGGTGCAGAAGGTCATCATGAGATGCCAGCTTGTCAATGTTGTAGCGAAAGGGAAACCAAGGGTACTGATGAGAGCTTTGTTGCAGATGACAATGGCAACTGATGATGCAACCGACAGCGCAAGAGACCCGATCACACCGAGCTGGAACCCAGATGACATCATCATTTGCTATTGTTATCTTCTCCTTGAAATTCAGAAACAGCAATCCCTGCTTGCTAACTTCGTCTCCTCAAAGAAATGAAACAACAGAGCTGTAATAATGAACCTTCCCAAATTGCTGCTGCTCTCTATACTGATGATCTACTCCTTGTTGCTCCTTCCTCTTCTCGCCGTCGCCGCTCTAACAACCTATAGAGATACAAGAAAAAAGAGAGATCTAGAGAGAAAAAGAGAGAGATATCTAGAGAGAGAGAGAGAGAGAGAGGCTATGGCTCTCCTTGGTATGGT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0346100.1 | 6 | 18003190 | T | A |
| Osa06LNT0346100.1 | 6 | 18003658 | T | C |
| Osa06LNT0346100.1 | 6 | 18003873 | A | G |
| Osa06LNT0346100.1 | 6 | 18004150 | C | T |
| Osa06LNT0346100.1 | 6 | 18004292 | A | G |
| Osa06LNT0346100.1 | 6 | 18004673 | T | A |
| Osa06LNT0346100.1 | 6 | 18004939 | A | C |
| Osa06LNT0346100.1 | 6 | 18006502 | G | A |
| Osa06LNT0346100.1 | 6 | 18007086 | C | T |
| Osa06LNT0346100.1 | 6 | 18007092 | A | G |
| Osa06LNT0346100.1 | 6 | 18007155 | A | G |
| Osa06LNT0346100.1 | 6 | 18007681 | A | G |
| Osa06LNT0346100.1 | 6 | 18008817 | A | T |
| Osa06LNT0346100.1 | 6 | 18009032 | A | G |
| Osa06LNT0346100.1 | 6 | 18005847 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0346100.1 | osa-miR5834 | Translation | 4.5 | 14.14 | 1 | 21 |
| Osa06LNT0346100.1 | osa-miR6245 | Translation | 5.0 | 17.714 | 1 | 21 |
| Osa06LNT0346100.1 | osa-miR444a-3p.2 | Translation | 5.0 | 13.776 | 1 | 21 |
| Osa06LNT0346100.1 | osa-miR529a | Cleavage | 4.5 | 15.67 | 1 | 20 |
| Osa06LNT0346100.1 | osa-miR444b.2 | Translation | 4.5 | 13.776 | 1 | 21 |
| Osa06LNT0346100.1 | osa-miR444b.2 | Translation | 5.0 | 23.243 | 1 | 21 |
| Osa06LNT0346100.1 | osa-miR444c.2 | Translation | 4.5 | 13.776 | 1 | 21 |
| Osa06LNT0346100.1 | osa-miR444c.2 | Translation | 5.0 | 23.243 | 1 | 21 |
| Osa06LNT0346100.1 | osa-miR444d.2 | Translation | 5.0 | 13.776 | 1 | 21 |
| Osa06LNT0346100.1 | osa-miR444e | Translation | 5.0 | 13.776 | 1 | 21 |
| Osa06LNT0346100.1 | osa-miR1441 | Cleavage | 5.0 | 21.3 | 1 | 21 |
| Osa06LNT0346100.1 | osa-miR1441 | Translation | 5.0 | 14.802 | 1 | 21 |
| Osa06LNT0346100.1 | osa-miR2863b | Cleavage | 4.5 | 24.261 | 1 | 21 |
| Osa06LNT0346100.1 | osa-miR5150-5p | Translation | 5.0 | 21.822 | 1 | 24 |
| Osa06LNT0346100.1 | osa-miR5488 | Translation | 4.0 | 17.065 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0346100.1 | 6 | gp6 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0346100.1 | 6 | qRS6-1 | Morphological trait | Shoot/Seedling | RZ667 | RG424 |
| Osa06LNT0346100.1 | 6 | qGY6-1 | Morphological trait | Seed | RZ667 | RG424 |
| Osa06LNT0346100.1 | 6 | qLVBSL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0346100.1 | 6 | qLVBTL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0346100.1 | 6 | qSL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0346100.1 | 6 | qTL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0346100.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0346100.1 | 6 | qHD-6-1 | Physiological trait | Flowering | RG424 | RZ667 |
| Osa06LNT0346100.1 | 6 | qPH2-6-1 | Morphological trait | Dwarf | RG424 | RZ667 |
| Osa06LNT0346100.1 | 6 | qTN2-6-1 | Morphological trait | Culm/leaf | RG424 | RZ667 |
| Osa06LNT0346100.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0346100.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0346100.1 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0346100.1 | 6 | qPHw6-2 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0346100.1 | 6 | qSFWd6 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0346100.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0346100.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)