© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0346400.1
AAGCAAAAGGGTAACCATAAGCGCGAGGACCATAAGCATCTTTGGATAGTATTTACAAATCAAAAGAACAACCACATGTCAGGCTAGGTCATTTAAGCTCCTTGATTATCAACGCAAAACACTGGTACGTCACTTTACTTTTCAGTTCTTCTGTGAGGATCTACTCTTTTGATTACTGGTAGAAGATGCAGCGCTAATAAATAGATAGAATGAGAATAATTAGAACAAGTGTAAATCACAAAAACGAGAACTGGGCGCCACAAAAACGACACCGATACTCAGACGCACCATAATAAGACCTATCCTTTGAAGTTTCTCGACAAAAAAAAAAACAAAAAAACATTAATTGAAACACCAAAATGTAGAAACCACACCCCTAAAACTAATAACAAACAAAAAAGACCTTTTAAAGACTCTGCATAGCTAGCATCAAATCTATTCGAAGACGTTGATGGCACACAAGGAGGCTTTCGACCTACAACAGGAACAACTCAAAAGACACACAATAACTAAACATAAGAACGCACAGTAAGCATAAAAAATCAATCAAGACCTGCCAACGCCAATCGCCTCACAGGTAAGTTTTTTGATCGAATTCGACGCCTCCTAGCACAGTACCATGCAGGGTAAATAGGGAAAAATTCATACAAGAAAGACTACAAGAGTTGATCGAATTCGACGCCTCCTACAAGAAAGACTACAATTATTGTTGAAGTCAGTATAAATACCTAAAGCGTTTAAGAATATAAATTTAAACGGTAATTTTGCTTGCCAGGGCATGCCAAAGATGCCTCCAATTTCTTACTTGTTGCAAAGCACAATGGGCAGTGCATTTTAAGTTCAATTGAAAATTTTCAATAACAAAATAATTTAAATAAAAAAGATAGTAGCATGGCATACCGCACACCTCTAATTCTTTAATTTGTCACACCATACAAATGCCAGTGTATTTTTAAGTTAATTTGAAATTTTTCAACAATAAAAAATGATGTCAATAAAGATGTATTACATTGCGTTCTCTACGGTGTGATCCAACTAACCAAATAGGGAGATCCAGAATGGAGAGCTTGTCCACAAATCGCTGGTAATACCTCCCATTAGATGGATGGCATAACCCTGCAACAAGTTGTAAGGCAATATCACGAACTGGCATTTCATAAAAAAGAAGTCATCAAATGGCGTACATCTGCTCAAATGTGTTTATCTGCTGTAGATTTCTAGCCGTGTACATCTTCAACATTCTAATCATTCATAAAAGAGAACATATGAGGGATAAGTTTATGTGCTGCCCTAAACAAGTGAACTAAATGTCTCTTCCCAGTACTTGGTAGAAAGACCTATAAAGCATCTCGTTGTTCACGATGTTTTAACAAAAAAAAAAAAGTCCACTTTACTCTCACAAACTATTTCAGCAGAGCACTGAGTTTTTTCGCTCATTTTACATCCCAAATTATGGCTAAAGTAAAATGATACTTTTTTATGATTAAACTAACCTCTACAGCTTTACCAAATCATATCCTCTAGTATTTTAAGATGACAGTTGACATAACCTGGGCCTACTCCATGTTCAACCTTTCTTTACAACAAACACCAAATTAGTCTATGGTCTAAACCAGAGAAACTCAAGACATGTTAAAAAAATGTCATCACGGCATATTTGGTATTTATACTAACTTGTATTTGGTATTTATACTGACTTGTATTTGGTATTAGCATGGCAACCCTTTTATGCATGACATGGGGAATTGGAGAACCATTAGTATGAAATTTTAAGATATGTTAAAGCTACCGCTAGACATCTATATGACACAGAACAAATAGATCGCAGGTTTGGTGGTATGAAGAAACCAAATGCCAATTAATTACATCCATATGTATAGAACTTATTTGTCCAACCGTACTTATGAAAAGAACCATGAAGTGATGAGTGCATACTAATTAATTAATTAATTACACTTAGAAATAAACAGTTGAGTTTTAAGGACATAAAACCACATAATATTGTTAGCTTTTGTAAAGCAGAGAAATTCATATTCCGGACAGTTTATGCATGTTGATAATAATAAATCAAATAAAGACACCGACAAGTCAAAAGACATATATGAGGATAATCAACATAACCTATGTAACTGCTGGGTCATGAAAAACATTCAAGGCCATCTGTCCCAGTATCAATATGTTGTGGTATAGAAAATGTTGAGGTTTAGATCTGAATGAAAAATTTCAGCAAAAAAAAAAAGTTGATGTCTTTCTTGTTAAAATAAGAAGAAACATCCAAAGTCTCTATGTTTCCAAATAGCAGGTAAAGTTGTAGCATGATGTTCTATCCATATTCTGAAACAAAAGTCAAGATTTTATAAGGTCGTCACGATTAATTAACAATCGAGCAATATTAGCCAGACTACTAACCTTGATGCCTGCATACATTTAGTGCAAGGAAGCAATTCAAATATTCACAATGGATGAATTGAAGACAATCTATCTGAAATGAGTCACAAAATAATCGCATGCCAAAAGGATCGGAAGTGGTCTGAATAAACTAACCTGAGAACTAAGGTTAGTAATCTCTGAAACTTTTAATTATTTGAAGGCCTGTATTAGATAGGTTCATTATTATCAACATTTGACAGGAACAAATGTCACCACAGCTCAAATCAAGCATAACTTTTTCAAATTGAAATAATGGTACAGTACAATTATGAAAGCAGTAGAGCTCAATGGAGGAGTCACCTCTTCTACCTGAGCTGCCAGCAGCCCAGCAGTACAAACTCATCCTTAAGCTTCAGCTTGTTCCGATTACCATCATGCAACCTCATCCACAAATATGATAACGGGAGCTAATCGGCTAGCAAAGGAGAAAAGGGCCTTTGTCAACTTCTCAGCATCTCCAAACCACTGGAAACTTTTTAGTAAAAGGAACCCGAGGCTTTTTCCTCATGTTGCTCAGGCATCATCGAGCTTTCTCATTCCGTATCTTAGCAAGGGATTCTGCTGGAGTGCCAAGTAGATCAGTCATGAGATCCAATTGATGCACAACATTTTTCCCTGGAAAGAGTGGCTTTCCTGTAAGCAGCTCTGCAAATATACATCCTATGCTCCAAATATCAATTGCAGGGGTGAACATTGTTAAATGGAAACGAGCTAGATCACCAGAAACGCCCCTGCTCCGAAATGCGCGACCTTCCCGTAGAGCTGGATGAGAGGCGGGGGGAGGAAGAAGGGGACGACGGTGAAGCCCATCCACAGCACGATCTTCGCCGGCCACCACTCGGAGTGCCATGAATTCCGGCGATCGTGCGTCTTCCTCGTCCTCACCGTCGACAAGAACATCACGTAGAAGAAGAGGAAGCAGCCAAGGCTGAGGCGGAGGACGCCCTCGCGCCGAGGCAGTAGCTGGCGCCCCGGCAGCTGCCGCGGAGTCGCCGGAGCTCGGCGAGTACGGGGTGGCCGAAGTCGTGGAGCATCCAGGTGAGCAGGTTGGTCGCCAAGAACACGAAGGCGTACACGTACCTCGCCATCATCGGGTTCGGCGGCCCACGCGTAGCACGTCTCCTCCACCGCCACCACCACGCACCTCTCCCCCCTCGCTTGGTGGCTCAACCACCGCCTCGGTCTCCTCGATCCGCCGCCGCGTCCCTAGCCTCCTTGGCCGCCACCGCTGAGAGGAGAGAGAAGGGGCACCGTGGAGCTGTCATCGGCTTCAACAACGGCGGCGACTGCGGCAGAGGTGGAGGCGCGCGGCGACGGGGACGACGATGGCGACGGCGCGAGGCGGATGTGGCGGCGCGAGGTGGAGGCGGAGGCAGCGCTCAGCGGTGGCAACGGCGATGGCGACGGCAGGAGAGGGAGAGAGAGAGAGAGAGAGAGCGAGAGGGTTAGAGAGAGGAGAGGAAGGAGAGGGCGTGGGCGGCGGCGGTAGCTATGGTTTTGGGGTGGGTAGGGCCCCGCCTTCACCACCGCTTGGCGACCGCAACGACGCGAGTGGGAGGCGGAGGAGCTCGGAGATCTCAACGTGACGGTGGCGGCGGAGGAGGTGGAGACGGCGGCTAGAGGGAAGGCGGAGGCGACAGGGACACGATGGCGGCGGCGCGAGGGGGATGCGGCGACGGCGACGGCGGCGGCGCGAGAGGGAGGCGAAGACGGTGGCGTGTGGGGGAGGCGAAGACGGCGGCGGCGGCGGCGGCGGCGGCGTGAGAGGGAGAGGGAGAGCGCGGGTGGGATGAGAGGGAGGAGGGGACTGCGGCGGCGGT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0346400.1 | 6 | 18159432 | T | C |
| Osa06LNT0346400.1 | 6 | 18159122 | A | T |
| Osa06LNT0346400.1 | 6 | 18159289 | T | C |
| Osa06LNT0346400.1 | 6 | 18161970 | T | C |
| Osa06LNT0346400.1 | 6 | 18162358 | G | C |
| Osa06LNT0346400.1 | 6 | 18163084 | G | A |
| Osa06LNT0346400.1 | 6 | 18163905 | A | G |
| Osa06LNT0346400.1 | 6 | 18164756 | A | G |
| Osa06LNT0346400.1 | 6 | 18165197 | A | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0346400.1 | osa-miR5526 | Cleavage | 4.5 | 11.712 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR5817 | Cleavage | 4.0 | 19.969 | 1 | 24 |
| Osa06LNT0346400.1 | osa-miR395t | Translation | 5.0 | 11.849 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR395c | Translation | 5.0 | 11.849 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR159a.2 | Cleavage | 5.0 | 15.409 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR167e-3p | Cleavage | 4.0 | 13.884 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR167h-3p | Cleavage | 5.0 | 13.884 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR167i-3p | Cleavage | 4.0 | 13.884 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR171b | Translation | 5.0 | 11.56 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR171c-3p | Translation | 5.0 | 11.56 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR171d-3p | Translation | 5.0 | 11.56 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR171e-3p | Translation | 5.0 | 11.56 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR171f-3p | Translation | 5.0 | 11.56 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR172b | Cleavage | 5.0 | 18.158 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR419 | Cleavage | 5.0 | 11.236 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR419 | Translation | 5.0 | 11.704 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR1426 | Cleavage | 5.0 | 14.772 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR810b.1 | Translation | 4.5 | 14.552 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR1442 | Cleavage | 5.0 | 15.031 | 1 | 20 |
| Osa06LNT0346400.1 | osa-miR2864.2 | Translation | 4.0 | 14.315 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR2863b | Cleavage | 5.0 | 20.363 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR2918 | Cleavage | 5.0 | 17.341 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR2927 | Cleavage | 4.5 | 24.055 | 1 | 23 |
| Osa06LNT0346400.1 | osa-miR2930 | Cleavage | 5.0 | 21.725 | 1 | 22 |
| Osa06LNT0346400.1 | osa-miR1862f | Cleavage | 4.5 | 21.516 | 1 | 20 |
| Osa06LNT0346400.1 | osa-miR1862g | Cleavage | 4.5 | 21.516 | 1 | 20 |
| Osa06LNT0346400.1 | osa-miR3979-5p | Cleavage | 4.0 | 18.11 | 1 | 20 |
| Osa06LNT0346400.1 | osa-miR5075 | Cleavage | 2.5 | 22.27 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR5075 | Cleavage | 5.0 | 19.563 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR5075 | Cleavage | 4.5 | 22.466 | 1 | 21 |
| Osa06LNT0346400.1 | osa-miR5515 | Translation | 5.0 | 21.177 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0346400.1 | 6 | gp6 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0346400.1 | 6 | qRS6-1 | Morphological trait | Shoot/Seedling | RZ667 | RG424 |
| Osa06LNT0346400.1 | 6 | qGY6-1 | Morphological trait | Seed | RZ667 | RG424 |
| Osa06LNT0346400.1 | 6 | qLVBSL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0346400.1 | 6 | qLVBTL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0346400.1 | 6 | qSL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0346400.1 | 6 | qTL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0346400.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0346400.1 | 6 | qHD-6-1 | Physiological trait | Flowering | RG424 | RZ667 |
| Osa06LNT0346400.1 | 6 | qPH2-6-1 | Morphological trait | Dwarf | RG424 | RZ667 |
| Osa06LNT0346400.1 | 6 | qTN2-6-1 | Morphological trait | Culm/leaf | RG424 | RZ667 |
| Osa06LNT0346400.1 | 6 | Pi-d2 | Resistance or Tolerance | Blast resistance | RM3 | RM527 |
| Osa06LNT0346400.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0346400.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0346400.1 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0346400.1 | 6 | qPHw6-2 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0346400.1 | 6 | qSFWd6 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0346400.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0346400.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)