>Osa06LNT0347000.2

CAGCATGTAGACATAATATTGAATAGCATGTGGTTCACAAAATACCTCACATAACAATGGTTCACAACATAACAGTGGTCACAACATAACAGTGGTTCACATGCACCATGGTTCACATGCACCATGGTTCACAAAAGACCTCAAATAACAGTGCCTCACATGCACCAACAACAAAGGTGGTTCACATACACTAACATGGTTCACATACACCACCATGGTTCACAAAATACCTCTTATAACAGTGCCTCACATGCATAGCACACAATCAAGTAGGCTTCATTTTCTTGGGTGTGAGCTTCTTTGTACATGTCCTCTTTGAGCTTGATTCAGCAATATTCAACCTCCTTTTACATGTCACTTGTGAAGCAAGTGCCGGTTGTGTGCTTGTCCCTCCTTGTTCCATTAACATTGCAAGCCGGCGTCTTGTCACAACTGTTGGGCTTTCTTGAATAATGGTTTGTACAGTAGGCCTAGTTGGGGTATGTGGTATAGGAGCAGGAGCAACATGAGCAGCAGGAGCATCAGGAGCATCAGGAGCAGGGGCATAAACCACATCAGGAGCATTAGGAGCAGGAGCCGGCCCATACCTCATTGTGTTCCATCTTGCCTTTCGTTTCGGCTTCTTCTTTGTACCATTGAGCTTGCACTTGTAGCTAGTTTGTCCATGACCCAACTCACCGCATTTTTTACACCTCTTTTTCCTCTAATCGTTGCCTTCTCTTTGGCAGTCTTTAGGCTTGCTACCACCACCTTCCAAGCAACCCTTGATCCTTAGTTTCCTGTACCTTCCTAGGTTCCTTTTTGCAAGGGGTGCACCAAGAACAAAAGGTAAATCCACCTTAGGCCATTGTGATTTGTCAGGGAGTGGCTCAATAATTGAGTTGTATGCATTCCAGAATAGGGCCACAGAGTAGTAGGGATTAATGTAGTTCTCCAACTTTACATCCCTAATTTGCTAGGAGGCAATCACTGCCAAGGCATGTTGGCAAGGCTTGCTAGTGTGTTGCCACTCCTGACATGTACAAGACTGCTCATGTGTCCTCACAACATGCCTAGCATGGCTGCTACTATTGTCCCAAACCTCAGCAGTGGTTATGTCAGCATGCACAACTGACAAGTGGCCTAACCCTCGAGTCCTAGCTCTCAACTGGTGCAAAATGGCAGGTAGAATTGTACCTGTGAATTTATTTCCAATCCTTCTCCTCCTATTCCACAGGGTCATTATCATCTCCCTACATGTGTCAGCAAGCTCACAAATAGGTAAGGCCTTTATATCTCTGATCCAATTGTTAAAGCACTCTGCAAGATTGTTAGTGACATAATCACATTTAATTTCAGCATTGAAGCCACTCCTGTACCATATCAATTTATGGTAAGTGTCAAGCCAGAGAGCCACATCGGTGCATGCTTTCTTAATTGTATCCATACACTCCTCGTGCACTTGTGCCCTATATGATCTAGCTACAGGATACATCTCTTGGAAGACAGATCCACCATATTTCTTGATTAGATTTTGCGTAAGGTGGTTAAAACATTCTCTATGTCCAGCCCAAGGGAAAACTCGGTGCACTGCAATCTCTAATCCTTTGCATGCATCAGTACAAATTGCAAGAGGAGATACTTTTCCTATGGCCTTGAGCAATTGAATCATAAACCAGGTCCAATTATCAGTAGTCTCAGCATCAAAGAAACCAAAAGCAATGGGGTACATCCAGTTGTTTCCATCTATAGCTATGGCAGATGCTAAATGTCCTTTCCACAAACCATTTAGGGCAGTTGAGTCTACACTAAGGTATGGCCTACATCCAGTTAGAAATCCAGTAATCCATGGACTAAGTGCACAAAAGAATCTGTTAAAATAAACCTTCCCATCAACCTCAATAGTGTCAATCTCAATAACACTACCAGGGGACCTCTCCATGACTGCAGCCCTCCACCTATACAACATATGGAAATTTTCTTCCCAACTACCTTGCAATTGGATCATAGCCAAACTCCTACCCTTAGCCACAGTATCATAATTGATTTTGCATTTCTGATCCTCTTGCAACCTTTTTTGCAGTTCTTTAGGGCCCATACCTGAGTCTGTCCTAAGGATATGGATGGCCTTGGAAGCAACCCAGGCGCTGGTTGGTGTGGTAGTCTTTCTTCTACCGCTAGATGTACACGTGTGATAATTAGTAAACTTTGTCACCTCCCAACAATCTGTAGCCAGGTGGAGTCATCCATGGAGTCAAACCCTAACCACACATTGAGGGAGGGGAGGAGGGAGTGGAGGGCGGGAAGAGCTGACCGAGGGGCAGCGGCTGATGGGGGTGGCAGCGGATGGAGGTAGCGGTGGATGGGGGCGGCGGTGGCGGCGGATGGGGGTGGTGGTGGATGGGGGCGGCGGCAGATGGGGGTGGCGGTGGATGGAGGCCGTGGTGGATGGGGGCGGCGGCGGATGGGGGTCGCGGTGGCGGCGGCGGATGGGGGTGGCGGTGGCAGCGGAGGCGGATGGGGGCGGTGGCGCTGACTGGGGGAGGACGAGGTAGGGGAGTGGCAGGGGCGGGGGCCGGCGCCGGCGCCGAAGACGAAGCCGATGCGGAGGCGCGCTGCTGTCGCCTCTGCCGATGCCGCTCCCAGCTTCTCCCTCAGTCAAC

Explanation	CPC Score
noncoding	-1.22232

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0347000.2	6	19233658	T	C
Osa06LNT0347000.2	6	19233464	T	C
Osa06LNT0347000.2	6	19233278	C	G
Osa06LNT0347000.2	6	19232106	T	C
Osa06LNT0347000.2	6	19232400	G	A
Osa06LNT0347000.2	6	19233481	T	C
Osa06LNT0347000.2	6	19233686	A	C
Osa06LNT0347000.2	6	19234147	A	G
Osa06LNT0347000.2	6	19234797	T	A
Osa06LNT0347000.2	6	19233939	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0347000.2	osa-miR5526	Cleavage	4.5	15.732	1	21
Osa06LNT0347000.2	osa-miR5791	Cleavage	4.5	13.775	1	21
Osa06LNT0347000.2	osa-miR5827	Cleavage	4.5	18.839	1	21
Osa06LNT0347000.2	osa-miR5837.1	Cleavage	5.0	20.182	1	21
Osa06LNT0347000.2	osa-miR396e-3p	Cleavage	3.0	19.299	1	24
Osa06LNT0347000.2	osa-miR1423-3p	Translation	4.5	20.695	1	21
Osa06LNT0347000.2	osa-miR1853-3p	Cleavage	4.0	19.719	1	22
Osa06LNT0347000.2	osa-miR1870-5p	Cleavage	5.0	13.241	1	24
Osa06LNT0347000.2	osa-miR1874-5p	Cleavage	3.5	23.248	1	24
Osa06LNT0347000.2	osa-miR1882a	Cleavage	3.5	23.622	1	24
Osa06LNT0347000.2	osa-miR1882b	Cleavage	3.5	23.622	1	24
Osa06LNT0347000.2	osa-miR1882c	Cleavage	3.5	23.622	1	24
Osa06LNT0347000.2	osa-miR1882d	Cleavage	3.5	23.622	1	24
Osa06LNT0347000.2	osa-miR1882e-5p	Cleavage	3.5	23.622	1	24
Osa06LNT0347000.2	osa-miR1882f	Cleavage	3.5	23.622	1	24
Osa06LNT0347000.2	osa-miR1882g	Cleavage	3.5	23.622	1	24
Osa06LNT0347000.2	osa-miR1882h	Cleavage	3.5	23.622	1	24
Osa06LNT0347000.2	osa-miR1846e	Cleavage	4.5	18.048	1	20
Osa06LNT0347000.2	osa-miR396f-3p	Cleavage	4.5	19.299	1	24
Osa06LNT0347000.2	osa-miR2867-5p	Translation	5.0	18.202	1	22
Osa06LNT0347000.2	osa-miR5526	Translation	4.5	22.547	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0347000.2	6	qLDLJ-6-1,2,3	Physiological trait	Source activity	RM217	RM3
Osa06LNT0347000.2	6	gp6	Morphological trait	Panicle/flower	RZ667	RG424
Osa06LNT0347000.2	6	qRS6-1	Morphological trait	Shoot/Seedling	RZ667	RG424
Osa06LNT0347000.2	6	qGY6-1	Morphological trait	Seed	RZ667	RG424
Osa06LNT0347000.2	6	qLVBSL6-1	Morphological trait	Panicle/flower	RZ667	RG424
Osa06LNT0347000.2	6	qLVBTL6-1	Morphological trait	Panicle/flower	RZ667	RG424
Osa06LNT0347000.2	6	qSL6-1	Morphological trait	Culm/leaf	RZ667	RG424
Osa06LNT0347000.2	6	qTL6-1	Morphological trait	Culm/leaf	RZ667	RG424
Osa06LNT0347000.2	6	nan	Physiological trait	Eating quality	RM253	RM162
Osa06LNT0347000.2	6	qHD-6-1	Physiological trait	Flowering	RG424	RZ667
Osa06LNT0347000.2	6	qPH2-6-1	Morphological trait	Dwarf	RG424	RZ667
Osa06LNT0347000.2	6	qTN2-6-1	Morphological trait	Culm/leaf	RG424	RZ667
Osa06LNT0347000.2	6	amy6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0347000.2	6	asv6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0347000.2	6	tgw6.1	Physiological trait	Source activity	RG264	RM3
Osa06LNT0347000.2	6	qSFWd6	Resistance or Tolerance	Other soil stress tolerance	RG424	RZ667
Osa06LNT0347000.2	6	qPHw6-2	Resistance or Tolerance	Other soil stress tolerance	RG424	RZ667
Osa06LNT0347000.2	6	ph6	Morphological trait	Dwarf	RZ667	RG653

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus