© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0347400.1
GCCTCTTGCATGTTTTGCCTTCTCACCTTCACCTTGTATAAAGTGCCAAGAGTTGTAGCATACACTACAAAAAGACAAAAACGACACGTAGCCAATGCATGCTACAAAACTAACAAATATTTGTTCACAGGCTACGTAGCCCTATCCTGTCAAAAAAGGTAGACTAACAGAGATTATATGTTCAATTTGGTGATCAACATTACACAAATACCATATTTATAGGCCAAATGGAGAACAGAGCTCTTGCACAATCTTCCAGATAGCGGATGCACAATGGTATTGTCCAATAAATACGATAGCGCATGCACAGGGGTATTGTGCTTCTATCCAATAGATACACGGGCACACAAAAATGGAAAGAAAGTAAAATTCCGTGTGCCACCAACTCAGATGTTTACATCAGCCTGATCATGCATGGTCAGGCTTTAAACATCACAGTACTGGGCATGCAAAACTACATATCGCTTGTGTACAGATTCACCTTCATAAGGCATATTTTCCATGTTGCAGGAGAAAAAAATTGAGACTGAAGCTTTAGTTGTGCTCCCAGTAGCCCATTATGACCTTTAATCATAGCTGTTTATTAGTTTACCAGCTAGACTGCTCCAAAACTCATACCACTGTGAAGCACGATAATATTGTGGTATGTGTATTCAAGAAAACTTTGGTTCGAGGAAGACTATTTTGATCGCAGACCTGGGATATTGTTCAGTCCCATCTTTCTAAGGACAAGCTTAGGCACCGCAGGAGGGTTATTCAAGCCCAGACTTCTGCTGAATTCATTGGCAAGTGATACAAGCTGGTATTTGTCACGCCCAATGAACTTGTTAGAATTATAGTAACCGAGCCATGCTTGGTAGGCAAGTTCCTTATCCTTAACCTCCACATGTGCAAGAGCCTTTTCAACCTTTCTTTTAGTGTCCAGATCAATTAAAGGTAATGTTGCCTCTGTAATAGGCAGATCTTTGATACTTCTCAAGAAGTATTCTTCCCACGGTGCCAATAATAAGATTCCACTCCCCTCGTTTCCTCTGCGGCCAGTTCTACCAAGTCGATGAATATATTGTTCTCTGTCAGTAGGCACTCCCATCTGGACGACTAGTGTGACATTGGGATAATCAACGCCCCTAGCAGATACATCGGAGCTAACAAGAATAAGACCTTTTGATTCCTTAAATTCTTTGGATATTCTGGTTCTGTAACTTTGTGGCTTTCTGGAGTGAATCTCGCGTACATTCAACTTCAATTCAGACAGAAGTTCAGCAACAAGACTTGTTACCTTTGCAGTTGTACAAAACACGATCACCTTGTAGTCAACATTTTCTGAAATATGATCAGTTAGAAGACCATACAGGATAGAAAACTGTTTGTCTAGTGGTGCAACTACATGCATTTGCTTCACCTGTGAGTGTGTTTCCTCACTTCCTTCTTCAACGGTGTTCACAAATTCAAGATCTCTTTTCATGGCAATGTGGCATACTTGGCGTACCTCATCAGGAACAGTTGCAGAAAATAGAAGTGTTTGACGCTGCTTTGGGAGTGCAGCCACTATTCTCTCGATATCAGTCCGGAATCCCATATCTAATAAGCGATCCGCTTCATCAAGAATAAGGACTTTGACACCCATCAATCTAGTAGCAAACCCTGGAGTGTTCTCCATATGATCCTTAAGCCTTCCTGGTGTAGCTACTAGAATCTGGCAAGGGTTAGTATGCATTCGCTTCTGCTCTAGAGCCATTCTAGTGCCACCTATTACAAGTTGCACTCCAATTGATGGATGAAATTTCAGGAGCTTGTTAGCTTCTGCAGCAGCCTGATCAGCCAGCTCACGTGTAGGGCACACAACAACAACACTGATGGGAGGCCTTTTTTTATCACAATCAATAGGGGGCAATTTGGAGACAACTTCAATGGCAGGAAGCAAGAATGCTACAGTTTTTCCAGTCCCAGTTTTTGCTTTTGCAAGAACATCCTTACCTTTAAGTATAATAGGAAGAGTGGCCTCCTGCACTGCAGTCATCCGTTCATACCCAGCAGCTTTAACACCTTTTAGTGTCAAGGGAGACAGGGAGCATTCATCAAACCTCGTCTGGCTCAAATACGAATCGCCACCTCCACTCTCTCTGGTGTGCACAACACCCTCCTGATCAATTGGCTCTCCTTTAATTGACTCAAAAGGAGCTGAATTTTTAGCTGGACTCTCCACCAGATTCTTCTCACCACCCTCGTCATCAAAGAGATCATCCTCGAAGCCTGATGGACCATCATCCTCATCAACTTCCCCCAGCTCACTGTCATCTTCTGACAAGCCAAAATCAAACATTTTACCACCCCTCGACCGCCTATCGCTAAAATCTGCATCGCCCCCTCTCCCACCTCTCTGTGGTCCCAAACTTCCCACATTCCTGCCTCTCGTGCCATGGTCGCGCCTTCTGCCTCTAGAGTCAATAGAATCGTTTTCATCATCCTCACTGTCATCTAAATCACTTCCCCTCCCACCTTTCCGTGACACACCAGACATCCTTCCACCACGACCACGTCTTCCCCTTGGAGACGAACCTCTTGAGTATTCATCATCCTCACTGTCATCTAAATCACTTCCCCTCCCACCTCTCCGCGATACACCAGACATCCTTCCACCGCGACCGCGTCTTCCCCTCAGAGACCCAAACCCACCTTCATCATCATCCAAATCACTGTACCTCCCGCCCTGGCCGCGCTGTCCCTTTGGAGATTGAAACCCAGGCTCATCATCAAAATCATATCCCCTCCGCGACACATTTGCCAACCTCCCACCTCGGCCGCGCTGCCCCCTTGTAGACCGAAACCCACCACCATCATCATCAAAATCGTTTGCCCTCCTCCCTCCATACGAAAATTCTGACTGTCTCCCTCCCCGATCATTTCCCCTCCTTCCTCTATGTGAAAATTCTGACTGTCTCCCTCCCCGATCCCGCCTTCCCCTCGCGGAACCAAACCCGACCTCATCCTCATCATCATCGTCGTCACCCAGCTCATTATTACTCACCATCCTCCCCCTCCTCTCAAACCCACGCCTATCGCCGCCGAAATCACCGCCACCGAATCTCGACCTCGGCGGCGGGCCCCTCGAGTCCCGCCCCCTCCGGCCTCCCCTCGAGGCAGCCGGCCCGCGCGTGGAGGCCTCGCCTTCGTCGCCGCTGCTGAGGCCGAGGTGGAACGAGTCGGTCTTGAGGTCGCTGATCCAGTCGCTGAGCTCGGCCTCGTCCTCGATCAGGCTCTTCGCGGCAGCTCCGGCGCCGGGGCCGGCGCGCGAGGAGAAGAAGCGGGGGCCAGCGGCGGCGGCGCCATTCCGCAGCGGGTCCTGGAGGAGGCCGGGGAGTGGTGGGCCCGCGCGGCGGGAGGCGGGCGTCGGCGAGGCCGTGGCGCGGCGGAGGAGGCCGAGGAGGTGGTGGTGGCGCCGCATGGCGGCGGCGGAGGATGGACGGTGGGCTGGGTTTAGGGTTTAACACAGG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0347400.1 | 6 | 19518760 | C | T |
| Osa06LNT0347400.1 | 6 | 19516754 | A | C |
| Osa06LNT0347400.1 | 6 | 19517095 | G | C |
| Osa06LNT0347400.1 | 6 | 19517242 | A | T |
| Osa06LNT0347400.1 | 6 | 19517873 | C | T |
| Osa06LNT0347400.1 | 6 | 19518131 | A | G |
| Osa06LNT0347400.1 | 6 | 19518508 | A | T |
| Osa06LNT0347400.1 | 6 | 19518625 | A | C |
| Osa06LNT0347400.1 | 6 | 19520862 | G | A |
| Osa06LNT0347400.1 | 6 | 19521118 | A | G |
| Osa06LNT0347400.1 | 6 | 19522281 | A | G |
| Osa06LNT0347400.1 | 6 | 19523182 | T | A |
| Osa06LNT0347400.1 | 6 | 19524207 | A | G |
| Osa06LNT0347400.1 | 6 | 19523561 | A | G |
| Osa06LNT0347400.1 | 6 | 19521807 | A | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0347400.1 | osa-miR812t | Translation | 4.5 | 11.026 | 1 | 24 |
| Osa06LNT0347400.1 | osa-miR812u | Translation | 4.5 | 11.026 | 1 | 24 |
| Osa06LNT0347400.1 | osa-miR5807 | Cleavage | 4.5 | 9.389 | 1 | 24 |
| Osa06LNT0347400.1 | osa-miR419 | Cleavage | 3.5 | 14.937 | 1 | 21 |
| Osa06LNT0347400.1 | osa-miR390-5p | Cleavage | 4.5 | 15.216 | 1 | 21 |
| Osa06LNT0347400.1 | osa-miR444b.1 | Translation | 5.0 | 18.637 | 1 | 21 |
| Osa06LNT0347400.1 | osa-miR444c.1 | Translation | 5.0 | 18.637 | 1 | 21 |
| Osa06LNT0347400.1 | osa-miR1435 | Cleavage | 4.5 | 15.908 | 1 | 20 |
| Osa06LNT0347400.1 | osa-miR1877 | Translation | 4.0 | 6.827 | 1 | 24 |
| Osa06LNT0347400.1 | osa-miR1877 | Translation | 4.0 | 9.466 | 1 | 24 |
| Osa06LNT0347400.1 | osa-miR1878 | Cleavage | 4.0 | 10.839 | 1 | 24 |
| Osa06LNT0347400.1 | osa-miR2099-3p | Cleavage | 4.5 | 20.137 | 1 | 20 |
| Osa06LNT0347400.1 | osa-miR2106 | Translation | 3.5 | 16.853 | 1 | 21 |
| Osa06LNT0347400.1 | osa-miR3979-5p | Cleavage | 5.0 | 15.593 | 1 | 20 |
| Osa06LNT0347400.1 | osa-miR812n-3p | Translation | 4.5 | 11.026 | 1 | 24 |
| Osa06LNT0347400.1 | osa-miR5075 | Cleavage | 2.5 | 21.636 | 1 | 21 |
| Osa06LNT0347400.1 | osa-miR5521 | Cleavage | 4.0 | 16.493 | 1 | 21 |
| Osa06LNT0347400.1 | osa-miR5524 | Translation | 5.0 | 17.032 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0347400.1 | 6 | qPHw6-2 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0347400.1 | 6 | qSFWd6 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0347400.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0347400.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0347400.1 | 6 | gp6 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0347400.1 | 6 | qRS6-1 | Morphological trait | Shoot/Seedling | RZ667 | RG424 |
| Osa06LNT0347400.1 | 6 | qGY6-1 | Morphological trait | Seed | RZ667 | RG424 |
| Osa06LNT0347400.1 | 6 | qLVBSL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0347400.1 | 6 | qLVBTL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0347400.1 | 6 | qSL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0347400.1 | 6 | qTL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0347400.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0347400.1 | 6 | qHD-6-1 | Physiological trait | Flowering | RG424 | RZ667 |
| Osa06LNT0347400.1 | 6 | qPH2-6-1 | Morphological trait | Dwarf | RG424 | RZ667 |
| Osa06LNT0347400.1 | 6 | qTN2-6-1 | Morphological trait | Culm/leaf | RG424 | RZ667 |
| Osa06LNT0347400.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0347400.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0347400.1 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)