© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0347900.1
AGGCTAACGGCCTCGGGCGTGGAGGAGGTGCCGGTGATGTTCTTGAAGGTGATGTCCTTGATGGTGACCTTGGAGTTGCCGTTGGCAGTGCAGATCTTGTTGGGGCAGTACTTCATGTCGATGATGATGGGGTTAGCAACGTCCTCCATCTTGATGTTCTCGTAGGTAAACTTGGAGGCGGTGAGCACCGAGGCGGCGTCCTCATAGGACTTGATCCGGACGCCATTGGTGGACTTCTTGAGCACGCAGTTCTTGACGGTAACATCCGTCACATCCTTCTCGTCCTTGTACCTGCCCAGGCTACCGACGCTGATGCCGTGGCCAGGACCGCAGGTGACGCCGGAGATGTTGACGCCCTCGGTGCCGGGGCCGATGGAGATGCAATCATCGCCGGTGCCGATGACCGTGTCAATGATGCTGATCTTGGAGGAGTCGCCCATGTGGATGCCATCCGTGTTCGGGCTGTCCCCCGGCGCGGTGATGGTCACGTCCTTGATGGTGATGTTCTTACTCTTGAACACGTTCATGTGGAAGAACTTGGGGTTCACCAGAGAGATGCCGCTGATGAGACCGTTGTTCACGAAGTCCAGCACCAAAGAAAGCATGCATGCATACGTTGGGGAGGATCTTGCAGTCGTATTTCTTGGCGCAGGAGTTCTTGCTCCAGACGGCGGCGCCCTGGCCGTCGAGCTTGCCCTTGCCGCTGATTTCGAGGCTTTCGAGGCGCATGATCTCGATCCAGTTCGACTTGAATAAGGCGAGGTCGGTGGAGCCGAGCAGGTTTCCGTCGAGCTGGATGACGATGTCGCCCTTGCATGGCCCGGTGAAGTTGAGGGGACCCGTCAAGAAGTCGCCCTTGGGGACGACGATCGTCTGCTTGCCGGTGCCAGCGCACGCCGCCGTCCACGCCTCGTTGACCGCCTTGGTGCTGTCCGTCTTGCCGTCGCCCTTGCCGCCCAGCTTCACCACGTCGTGGGTGCTACCGCCGCCGCCCCCCGAGGCGGCGGC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0347900.1 | 6 | 20582966 | T | C |
| Osa06LNT0347900.1 | 6 | 20583244 | A | G |
| Osa06LNT0347900.1 | 6 | 20583397 | T | C |
| Osa06LNT0347900.1 | 6 | 20583513 | T | C |
| Osa06LNT0347900.1 | 6 | 20583535 | T | G |
| Osa06LNT0347900.1 | 6 | 20583943 | A | G |
| Osa06LNT0347900.1 | 6 | 20582635 | T | G |
| Osa06LNT0347900.1 | 6 | 20591950 | G | A |
| Osa06LNT0347900.1 | 6 | 20583953 | A | G |
| Osa06LNT0347900.1 | 6 | 20583994 | T | C |
| Osa06LNT0347900.1 | 6 | 20584046 | C | G |
| Osa06LNT0347900.1 | 6 | 20584058 | C | G |
| Osa06LNT0347900.1 | 6 | 20584224 | C | T |
| Osa06LNT0347900.1 | 6 | 20584272 | A | G |
| Osa06LNT0347900.1 | 6 | 20588077 | G | A |
| Osa06LNT0347900.1 | 6 | 20588309 | A | G |
| Osa06LNT0347900.1 | 6 | 20588390 | A | G |
| Osa06LNT0347900.1 | 6 | 20588581 | T | A |
| Osa06LNT0347900.1 | 6 | 20588712 | T | G |
| Osa06LNT0347900.1 | 6 | 20589053 | T | C |
| Osa06LNT0347900.1 | 6 | 20589131 | C | T |
| Osa06LNT0347900.1 | 6 | 20589522 | A | G |
| Osa06LNT0347900.1 | 6 | 20589800 | A | T |
| Osa06LNT0347900.1 | 6 | 20589806 | T | C |
| Osa06LNT0347900.1 | 6 | 20589943 | A | G |
| Osa06LNT0347900.1 | 6 | 20590113 | A | G |
| Osa06LNT0347900.1 | 6 | 20590173 | C | T |
| Osa06LNT0347900.1 | 6 | 20590478 | G | A |
| Osa06LNT0347900.1 | 6 | 20591444 | A | G |
| Osa06LNT0347900.1 | 6 | 20591542 | A | G |
| Osa06LNT0347900.1 | 6 | 20591688 | A | G |
| Osa06LNT0347900.1 | 6 | 20591719 | A | G |
| Osa06LNT0347900.1 | 6 | 20591726 | A | T |
| Osa06LNT0347900.1 | 6 | 20591757 | G | A |
| Osa06LNT0347900.1 | 6 | 20592136 | C | G |
| Osa06LNT0347900.1 | 6 | 20592178 | T | G |
| Osa06LNT0347900.1 | 6 | 20593485 | C | A |
| Osa06LNT0347900.1 | 6 | 20602332 | C | T |
| Osa06LNT0347900.1 | 6 | 20602637 | T | C |
| Osa06LNT0347900.1 | 6 | 20602649 | T | C |
| Osa06LNT0347900.1 | 6 | 20602722 | A | G |
| Osa06LNT0347900.1 | 6 | 20602961 | T | C |
| Osa06LNT0347900.1 | 6 | 20603048 | C | T |
| Osa06LNT0347900.1 | 6 | 20603730 | C | A |
| Osa06LNT0347900.1 | 6 | 20603744 | T | C |
| Osa06LNT0347900.1 | 6 | 20605151 | G | C |
| Osa06LNT0347900.1 | 6 | 20605169 | G | T |
| Osa06LNT0347900.1 | 6 | 20605226 | T | C |
| Osa06LNT0347900.1 | 6 | 20605324 | T | A |
| Osa06LNT0347900.1 | 6 | 20605772 | G | A |
| Osa06LNT0347900.1 | 6 | 20605811 | G | A |
| Osa06LNT0347900.1 | 6 | 20605821 | G | A |
| Osa06LNT0347900.1 | 6 | 20615318 | A | G |
| Osa06LNT0347900.1 | 6 | 20615579 | C | G |
| Osa06LNT0347900.1 | 6 | 20615618 | T | A |
| Osa06LNT0347900.1 | 6 | 20615657 | T | C |
| Osa06LNT0347900.1 | 6 | 20615661 | T | C |
| Osa06LNT0347900.1 | 6 | 20617701 | A | G |
| Osa06LNT0347900.1 | 6 | 20619849 | T | C |
| Osa06LNT0347900.1 | 6 | 20619896 | A | G |
| Osa06LNT0347900.1 | 6 | 20582106 | G | A |
| Osa06LNT0347900.1 | 6 | 20588585 | T | G |
| Osa06LNT0347900.1 | 6 | 20603108 | A | G |
| Osa06LNT0347900.1 | 6 | 20602238 | A | G |
| Osa06LNT0347900.1 | 6 | 20582842 | G | T |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa06LNT0347900.1 | DTM_#DNAt_MULE_japo_Os0053 | Chr6 | + | 20597209 | 20598397 | 1188 |
| Osa06LNT0347900.1 | DTM_#DNAt_MULE_japo_Os2088 | Chr6 | + | 20599141 | 20600240 | 1099 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0347900.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0347900.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0347900.1 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0347900.1 | 6 | qPHw6-2 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0347900.1 | 6 | qSFWd6 | Resistance or Tolerance | Other soil stress tolerance | RG424 | RZ667 |
| Osa06LNT0347900.1 | 6 | qRS6-1 | Morphological trait | Shoot/Seedling | RZ667 | RG424 |
| Osa06LNT0347900.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0347900.1 | 6 | gp6 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0347900.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0347900.1 | 6 | qGY6-1 | Morphological trait | Seed | RZ667 | RG424 |
| Osa06LNT0347900.1 | 6 | qLVBTL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0347900.1 | 6 | qLVBSL6-1 | Morphological trait | Panicle/flower | RZ667 | RG424 |
| Osa06LNT0347900.1 | 6 | qHD-6-1 | Physiological trait | Flowering | RG424 | RZ667 |
| Osa06LNT0347900.1 | 6 | qSL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0347900.1 | 6 | qTL6-1 | Morphological trait | Culm/leaf | RZ667 | RG424 |
| Osa06LNT0347900.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0347900.1 | 6 | qTN2-6-1 | Morphological trait | Culm/leaf | RG424 | RZ667 |
| Osa06LNT0347900.1 | 6 | qPH2-6-1 | Morphological trait | Dwarf | RG424 | RZ667 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)