\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0348300.1

GTTATATGAAATCTACTCAGAAAATATTGAATATTAAACGACCACGCATATTATTACAATATAGTTTATTTTCCAATGTGTGACAAAATGTCACATCTCTACGTACACTTGATATACTAAACTTTTTTTTTTTGCGGGGATGATATACTAAACTGCTATTATTAGCATATTCATGATAGCACACTTAGGAGCCGTCATGTACACCAACTGACCAAGTGGGGCGACATTTATTCTATAGCTTTTATAGCTAGGAACTTTATGATACGGCCGGCTATATATGCATTTGTTTAATTATATAAGCACGTAGACAAAGTTGCATGCAGCTGGCTAGACACACTGCATATATATATATATATATATATATATATATATATATATATATATATATATATGCATGAGTGGCCATTATATTGGTCAACACTCAACATGTACAAGAGCTAGAAGATCGAAGATCGATCGATATTGATCAGATCAGGTTGGCCTCCTCCCACCTGTGCCTGTCGGGCGCTGGCAGTTGAAGTACATGGCGGCCACCGGCTTGCCGAGGTTGAAACGGCGCGCGAAGCTGCGCAGGTTGAAGTTCTGACGCACCTGCGGCGCGAACACCGTGCCGCGCCCAAGCTGCTGATACAACACCATCACGATGCGGTGGATGCCCATGGTGGGGCTTGGGCTTTCGTATGTTACGATCTCCCGCCCAAAGCTATCGTCCGTCGATGATGGGATATCAGTCACCATCCAGTGCAGGTATTCCCTCAAGGTTGGGTTGCTGGGATTAGGAGCATCAGGATCCACCATAACTAGGGTATAGGCAAATCGAAAATCATCGCCACCAATCTCAACTCTAGGTTTCATCGAGACTGCCGAGGAACGGAACTCCTTGCCATTAAACACAGGCCTCCCATCATACATCACAGTTAGAGGCACTGAGTTTGAAAATTGGTCTAACACATCTCCAACTATATGGCTCCTTGTCAATGAGTCATTTGCCATGATGTGTTTTGAGACTGTGAGAGCTGATATATGTAGGTGTGAGCTGAAGCTAAGCTAGCTAGCTCTACAAATGCTAACAGGCCTTGC

Coding Potentia
Explanation CPC Score
noncoding -1.18919
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0348300.1 6 20972361 T G
Osa06LNT0348300.1 6 20972599 A G
Osa06LNT0348300.1 6 20972848 A G
Osa06LNT0348300.1 6 20973930 G T
Osa06LNT0348300.1 6 20974176 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0348300.1 osa-miR2118f Translation 5.0 19.282 1 22
Osa06LNT0348300.1 osa-miR2118h Translation 4.0 19.282 1 22
Osa06LNT0348300.1 osa-miR2118j Translation 5.0 19.282 1 22
Osa06LNT0348300.1 osa-miR2118k Translation 4.0 19.282 1 22
Osa06LNT0348300.1 osa-miR2118m Translation 5.0 19.282 1 22
Osa06LNT0348300.1 osa-miR2118o Translation 5.0 19.282 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0348300.1 6 RPLD4 Physiological trait Eating quality RG424 RG172
Osa06LNT0348300.1 6 nan Physiological trait Eating quality RM253 RM162
Osa06LNT0348300.1 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0348300.1 6 asv6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0348300.1 6 tgw6.1 Physiological trait Source activity RG264 RM3
Osa06LNT0348300.1 6 gw6 Morphological trait Panicle/flower RG424 R2549
Osa06LNT0348300.1 6 ph6 Morphological trait Dwarf RZ667 RG653
Osa06LNT0348300.1 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus