© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0348400.1
CTGACAACAATGCTCTTATAAAGTTTACATTTCCAAAGCTAAAAGGTCATATGAAACCTCGCCACATTTGGCGATGTATGGAATACAGAAAACCTACCAGCATATTTACATGGCATATATAGACCACAAAAATGTGAGGATAAAAGAAGATATTATCTGTGGGGAAAGGACAAAAGAAGATTTGGTTCAAAACCAAAAAAAAGTTTCCAACCAGATTTTGCCTGTTGTTTCAATGCCCCTATCGATGTTGGAAGTTCAACTTCTTGATGCAAATGGCATACATGAACGCGAAAAACACAGCGAAGAGCACGAGCACCGGCGCAACAACTGGCATAAATTTCCTGTGATATCCAAAATGATGAGTAACATAGTAGCTGATTGTCTGGTTGGATTGGCCAGGGACTGAGATGATTTGTTCTAGGTCTCCATACTGTGTCACTATGAGCCCATACACTGTCCATGCCAATGGGCAAAGCCAGTAGTACCAGATCCACCATTTGGGAATCCTTGGTCTCGGAATGAAGAATCCTGAGAATAGGTTGAACAAGGAATAGAACGCCGCGGCAAAGATGGCTGCAACCTCATGGTTTGGTGAGATTGCCACCGTCATCATACCATAGTAGGTGAAGTAGAGAAATGAGAAGTAGGAGACGAAGAAGAACCAGAAGAACTTGGCTGCTGTCCACTGGAAGCTCATCATGGCATAAACAATGAGGGTATAATATGCAGTTTGGACGAACACATAGGGTATCTCCATGACAACCTGAGCAATGGCATAGGGCATAGCAGAGTACATCCCAGCAGCCCTCTCTCGGTAGAAAACTGTTCTCTCAATCGACACGATTGGCTGCACAGTCGCACAATTGTTGATACCGATAAACATCACTGCTGTATACATTGCTCCAATGACCATTCTAAGAGAATTGGCATTTCCCATCTTGGTGCCGATCTTCCAAAAGATGGTGCCGAGTAGCAAGGCTGTGAACAGAGTGAAGGAAAATCTAACAAGATTGTAATCTGGGCTGCGCCAATAGGTCAGCCATTGCTTCCAGAGGCAGGCCCTAAATTGCCCTATGGTGGATTGAGAGTATTTTGTAGGAAAATGCAGATCTGATGTTCCTGGCTCTGGTTGACTTAGCTGATTCACCAATACCTTGTTTTGCTTGTACAGGTCTGATGTCTTATAGTACTCAGCAAAGTCCATATTTAAGCGTACTTCCGCAGCAACTGAACTGACCTCAAGCATCCATGTAGCTGGATTGTACTTATCTTTGATTTTAGGCACACCAGGAATTGCCTCGAAATATTCAATCATTTTCTGGGAATTACGACCCAATTGCCCAGAGTATATCACCTGCCCTCCTCTTTTCAGTAGTAGCAGCTCATCAAAAGCCTCAAATATGTCAATGCTTGGCTGGTGAATTGTGCAAACCACTGTCCGTCCAGTGTCAACTGTGTTCCTCACTGTTCTCATAACAATGGCTGCTGCTCTTGCATCAAGACCTGAAGTCGGTTCATCCATGAAGATGATCGAGGGATTTGCAACAAGCTCCACTGCTATTGTCAATCTCTTCCTTTGCTCTGTTGAAAGCCCTGTGATTCCAGGCAGGCCAACTAACGCATCCTTCAGATTGTCGAGCTCCACTAGTTCCATAACTTCATCAACAAATTGAATCTTGATATCATCAGTGATTTCTTGATCTCCTATTTTTTCTGGAAGGCGCAGGAAAGCAGAGTATATCAAAGACTCCCTAACTGTGACCTGAGGTGAATGGATATCGTTTTGCTCACAGTAGCCAGAAATTCTTGCAAATGTTTCTTGGTTCTTAGGATAACCAGAAATTCTCATATCTCCTTCAATGTAACCACCAGTCTTTCTTCCTGCCAAAACATCCATAAGAGTTGTCTTTCCGGCTCCACTGACTCCCATGAGTGCTGTCAGCACTGCAGGCCTAAATGATCCAGTAACGTCACGTAACAATTGGAGCCTATCATCCACCACTCCTTGCTGCTTCATTTCTGCAGGCATGTCGACATAGTAGTTCACATCATCAAAAGACATGGATAGAGGAGTAAATGGAAGAACCATTCCTCTTCTTGGACCAGCTTCATTGCTACCAATGGACATCAGTCGTGAAACTCCATTCGATGAACTATTGCTCAGACGAGCACTCAATCTCATCTCCCTCATTTCTTTGTGATTTCCACCATTTGATTTTGTGCTGCCATTTCTTACTGTATGTCTTGCATCCCCATTGCCTTCCGCTTCCTTCGCAGTTTCTTCAGATATGACAGCTTGTGGTTTGCCCAGAGGATTCAGATAAACGAGTGACAGAGTGAAAAGCACATTGAAAAACATGGTGAAACCCAGGAGCCCTGCTGCTCCAATCCAGAACCAATTTTTGTCAGTGAAGATGTTGGCACCTTCCATCAGAGCTATTCCTAGTCTTTTAGGAACGCCATTGTTATCCAGTACAAACTTGTTCATCCACCGAGGAGAGTAGAATTCATTGACTGCTAGAGCATTATACCCGTACATCAGTGGTGAAACCCAGTAACCCCAGATCCACCATTTTGGGATGAATGCTTTTGGCAGAAGAAATCCTCCAAGAACGAAAAATATGAGAAGGGCCAGGGCTCCTCCAGTTTGAGCAATGATCATGGATCTGCACAGACCAGCAGTTGCTCTGAAAAGGCCACCTGCCATCTGCTGGATCAAGAACACTAGCAGCAACTGCTTGAAAAATCTGTCAGCCTCTGGGGCAAATCCTATAGTGTAGTATGTAACAATCACCCAGACTATAGATTCGATGATGGAAAATGGGATTCTCAGAATAACATTCGGTAGAGTGAAGATCCAAGCAGGGTAGAAGAGGAGGTCCCGGTGCTTGAAGAACACTGGCAACCTTGTGATGGTCAAAGAGAGCTCAGCGAAACCATTGAACATGTTCACAATCAGACTGAAAAGTAGTGCTCCAATGTACACAAAGCCATCATCTAAATTCCTTGTGTGCATCTGGGTCCTAAGAAACACTGTCGACGCGACAAGGGCTACAATGATGAGCTGTATGGTCTTGAAGATGTACACAAATGAGTTGCGCTTAATGAGGAGCCACTCCTTGGCAAAGGATGCCTTGAGGAGCTCTGTTGTTGACACCGATTGCTTCGAGAAGACAAGAGCAGCCTGATGGCTACGAGTTTTATCAAATGGGACTGAGAGATGATTCTCAAGTTGGAGCCCAACATGGAACCTTTTAAATCTCTGTGCAAATTCTGAGACTGAAATGTATCTGTATGGCCTATGCTTGTCGGCCCAATACTGCTCCTGATCCTTCTTTGATGTCACCTCCTGAAGAAAGTCTGCAGTACCCTTACGCTCTGGGCAGCGGAATCCGCATGACTCAAAGAACTCAAGGACGTATTCGCGGGGTCCCTGATAAACAATCTGGCCTTCTGACAGTAGGATAATGTCATCGAATAGCTCAAAAGTCTCAGGGGCTGGTTGTAGGAGTGACATGAGGATGGTTGCCTCGCCCAAGTGCACGATTTGCTGAAGGCATTTGACAATCTGGAATGTGGTGGAGCTGTCCAATCCAGTTGATATCTCATCCATGAATAGAACCTTTGTTGGACCGACAATCATCTCACCGGTGGTGACGCGTTTCTTCTGACCACCGGAGATCCCCCTCTGCATCTGGTCGCCGACGATCGTGTCCGCGCATATATCCAATCCCAGTATTCTGAGGGTGTAATCTGTCTGAAGGCTGCTCTCGACTCCTTCCATCGAAGTAGCCTTCATGAAGAGGTCGACCTCGGGCTCCGGCCGGATGCCGGCCTCCTTCTCCCTCCTTGCCAGCTCTGTCAGAAGATCGTACTTGGTGCCGACGCCCTGGCACCTGGCCGAGAAGTCGAGCGTCTCCTTGACGGTCATCTCGCCGACGTGCACGTCCG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0348400.1 | 6 | 21121514 | T | A |
| Osa06LNT0348400.1 | 6 | 21121534 | G | A |
| Osa06LNT0348400.1 | 6 | 21114686 | A | G |
| Osa06LNT0348400.1 | 6 | 21115832 | G | T |
| Osa06LNT0348400.1 | 6 | 21116077 | T | C |
| Osa06LNT0348400.1 | 6 | 21116089 | G | C |
| Osa06LNT0348400.1 | 6 | 21116709 | C | A |
| Osa06LNT0348400.1 | 6 | 21117366 | A | C |
| Osa06LNT0348400.1 | 6 | 21118578 | G | A |
| Osa06LNT0348400.1 | 6 | 21118745 | A | G |
| Osa06LNT0348400.1 | 6 | 21118765 | T | C |
| Osa06LNT0348400.1 | 6 | 21120076 | C | A |
| Osa06LNT0348400.1 | 6 | 21120078 | C | A |
| Osa06LNT0348400.1 | 6 | 21121635 | T | C |
| Osa06LNT0348400.1 | 6 | 21121156 | C | T |
| Osa06LNT0348400.1 | 6 | 21119051 | T | C |
| Osa06LNT0348400.1 | 6 | 21121094 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0348400.1 | osa-miR5533 | Cleavage | 4.0 | 22.644 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR164a | Cleavage | 3.5 | 15.47 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR164b | Cleavage | 3.5 | 15.47 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR164d | Cleavage | 3.5 | 15.47 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR164e | Cleavage | 3.5 | 15.47 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR164f | Cleavage | 3.5 | 15.47 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR820a | Cleavage | 4.5 | 22.374 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR820b | Cleavage | 4.5 | 22.374 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR820c | Cleavage | 4.5 | 22.374 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR1850.1 | Cleavage | 5.0 | 17.821 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR1861n | Cleavage | 3.5 | 13.383 | 1 | 22 |
| Osa06LNT0348400.1 | osa-miR1320-3p | Translation | 5.0 | 22.075 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR1320-3p | Translation | 5.0 | 15.151 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR827 | Translation | 4.0 | 18.043 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR2091-5p | Translation | 3.5 | 14.552 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR2872 | Translation | 4.0 | 8.663 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR2931 | Translation | 4.5 | 18.314 | 1 | 20 |
| Osa06LNT0348400.1 | osa-miR5147 | Cleavage | 3.5 | 16.679 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR5339 | Translation | 5.0 | 24.484 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR5498 | Translation | 4.5 | 11.113 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR5498 | Translation | 4.5 | 13.223 | 1 | 21 |
| Osa06LNT0348400.1 | osa-miR5500 | Cleavage | 5.0 | 11.204 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0348400.1 | 6 | gw6 | Morphological trait | Panicle/flower | RG424 | R2549 |
| Osa06LNT0348400.1 | 6 | RPLD4 | Physiological trait | Eating quality | RG424 | RG172 |
| Osa06LNT0348400.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0348400.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0348400.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0348400.1 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0348400.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0348400.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)