>Osa06LNT0348500.1

ACAGAAACCACCGTCGTATCATTAACAGGTTAATAAGCAGTGCCAGTTTGTCGATTAACCTGGTATGAGATCAACTCCAGGTTGTTTGTCAGTGAAATCCCAAGGGCAATTTGCGACTATTGGTTCCCCATATACACTAGCAGTTCATCAGTTGACATGAAAAACTCAGAAACCAGAGCTTCCCTAACTGATCGGAACACATAGATGCATCTTGCAGGGGATAGGAAAGGAAACAACTGATCAGGATCCACAAGACTAGACGTAAATAAACTACGTCAAACAAGAAAACTGTTCCTTCTCGCTGCAAAGGAAACCATAGACCTGCTTCAAGTTTCCTCTAGATGGTCTTGCATTAACAGCATATTTGCAAACAAAAACCAGCCTCTTCCTCATCTCCAACTTCGTGACGTCTCCTTTCAGAAATGAATTGCCATGATCAAAGAATCCATCGCAATCAAATAATCGTGTAATTATCGCCAAGGCCACACAGATGCTTATATCCTCTCCATTTTGACAGCATATTAGTAGCTTCTTCCCTGCTATCAAATTCCTGTTTGCAAAGCTAACTGCTTTTGGAAGGTTTTTCATCAACGAAAACCGGTCGTCCTTTGATCCCACCATAGGTAGTTCAAGGTAAGAATTCTCTGATGAAGTCAAAGGTAAATTTGATGTGCTGTCACAGTTCAGTATACAATCCACTTCAGCTAAGGAATCTCCAACTTGGAGAGTTGATGCTACTGCAAGGTTTGATGTCCCAATCCAGAAGAGTATATGGCCATCACTGGAATTTTGTTTGTCCATAGCAGTAACGGTAGGAGGATCCGAGTCCATTGGTTGCACAATACTTGTATGATCACCATTACTGAAAGGACCATCATGGCTTGAACACTTCAAAGGCTTAGCTGTAATTTGGGGAGAATATTCGCCTCTCTGTGCACGATAGACCCTATCTTTTTCAACAATATCTGCAACTAACTGATTACAAAGGTCTGGTCCACCATCAAGCAGATCATATGAGTGCTTCCAGAATAATGTAGGAGTGAGACCACGTGCCCAACTCTCTTCATCATCTCCAGCTCCAGGAATATAGTGCCAGCTGAACTCTGAAGTCATCCTTTGTGTAGCTACTGCACCAGATGCAGATGCTGAAACTAATATGATAGGGGTGAAATCCCATGATTCAAGCTCTGGAACTTCATTTAACCATATCCGTGTCCTTTGTGATATCCACAATGGACGTAGTGGTTTCTTCAAACTTAACGCAAGAGAACGAATGTCTGCACCACATGATTCAAATTGGGTTGTCCATTCCTCGATACGCCCCTCTATAGCATTTTTCTCAGTCTCTAGAACCCATACAGGAAGATGCACTGAGTTATCCCAGTTTGATGATTCAGAGATCTTTTCAGCGTCTTTGTTGGCTACAGCAGCTTGTTGTTAGTCTGCAGCCGATACCTCTCAATTGCTCGGTTGAGGACACAACACCAAATGGGTATGGTCTTTGACATGCTGTCAGGGAAACGTTTCCCTCTCCTTGTTGAATCAACAATTATGCACCCTCCTCTCTCCCCAGCGAGGAGGGCGAGGTGGAGGTTGAGGCGGGCGGTGGAGAAGGCCCAGTTGCCCGCGTGCCCATCGGTGGACTTGAAGTAGCAGGTGGCGGCGACGGCGCGGGGCGGCAAGTACCAGAGCCCGCAGCGGAGGTTGGCGACCAGCGGCAGCGCCGGCCACAGCGCCGCGATCTCCGCCACGAACGCGGCGTCGTCCGCCACGCTCCGCAGCGCGTTGTACAGCGTGCTCTCCCGCCGCTTGATGCGCCGCGCCGCCTTGTAGATGCTCAGCGTCGACGGCCCAGCGGCGGCGGCATCCGCTGACTCCGACGACGCCGCCGCCGCCGCCATTGGAGAGACGAGAAAGAGAGAG

Explanation	CPC Score
noncoding	-1.04115

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0348500.1	6	21169199	C	T
Osa06LNT0348500.1	6	21169748	A	C
Osa06LNT0348500.1	6	21169811	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0348500.1	osa-miR5837.2	Cleavage	4.0	13.359	1	21
Osa06LNT0348500.1	osa-miR418	Cleavage	5.0	13.952	1	21
Osa06LNT0348500.1	osa-miR418	Translation	4.5	12.037	1	21
Osa06LNT0348500.1	osa-miR1863b	Translation	5.0	21.381	1	24
Osa06LNT0348500.1	osa-miR1863b	Cleavage	5.0	20.569	1	24
Osa06LNT0348500.1	osa-miR1863b	Translation	5.0	15.988	1	24
Osa06LNT0348500.1	osa-miR2931	Translation	4.5	20.195	1	20
Osa06LNT0348500.1	osa-miR5153	Cleavage	4.5	17.98	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0348500.1	6	amy6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0348500.1	6	asv6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0348500.1	6	tgw6.1	Physiological trait	Source activity	RG264	RM3
Osa06LNT0348500.1	6	RPLD4	Physiological trait	Eating quality	RG424	RG172
Osa06LNT0348500.1	6	qLDLJ-6-1,2,3	Physiological trait	Source activity	RM217	RM3
Osa06LNT0348500.1	6	gw6	Morphological trait	Panicle/flower	RG424	R2549
Osa06LNT0348500.1	6	ph6	Morphological trait	Dwarf	RZ667	RG653
Osa06LNT0348500.1	6	nan	Physiological trait	Eating quality	RM253	RM162

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus