© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0348800.1
CTTGGGAAACGCAATGTAAAGATAATACAAGGTCATGGCACCCGCAAGCATACATCTTATATATAATAAGTGTACAACATTCTTTCTTGGGTGAATGCTTATATCAAAAGAAAATTTTCCAAGTACACATACAATGATACAAAACGACAGCTTTGTTTGCCATGTTTATGGTGAAGACATCCATAAAAGAAAAAAAAACATGAAATCTAGCTACTCCTTGTCATGGTAAGGAGAACACATCGTAAAGTAACTCAAATCGACATCGCCGTAGCTGGCCTCTTCAAAGAAGGTTATTCGTTTAATTTGCGGCCCATCTCAACATACTCCTTAGCCAAGGTCGGACCTGATCAGAGGTCAACTTTCTTCGCAAGCTTTGTATAGATGATGCGATTATCCCTTGCAGAATTGCTCTCAACAAGGGCGATTTGAACCAAATCCTTCACATCCCTGTTAGATAAGAACTTCCCCAAATTATGAAGAATGCACCTTAAATCATCCACCTTCAAATAACCGGCTCTGTTTTGGTCGAAGTATCTAAAAGCCTGCAGCAGCTCTTTATCAACGACCTCATCTTTTGTTGAATCACCTTTTTGTGATCTAGTTGTCTTTACCTCCTTACCAACTGCCTTGTCACCTTTCTCCGATACAGATTGTTTGCCCTCCACTGAAGCAGATTTTTCAACTACAGACTGTTTGTCCTCTCCTGAAGCAGCTTTTTCAAGCATATTAGCATTGTTTTCTGACTCACGCTCCTCTGTGTTCTTGTTTCCATCCTCTTCAGTAGTTACTTCCTGCTTGGCCTTATCATTCAAATTATCTTCATTCTGTTCTACCAGTTCCTCAGCAGCAGCTTCATCCATCTCCTCATCATCTTCATATAATTCTACCTCTTCAGGATCTTCTTCATAATCAGGCTCTTCATCCTCCATTTTCTCATCAGCTACAGGCTCAACATGGACAGCTGCTGAATTATCCGTGTTCATGTTTTCCTCACCCTCTTTTATAAGTTCTTTAGGGGGCGCTGTCGAGTGATCTGCACTCATCTTCTCCTTGCCCTCTTTAACCAGTTCATCCTGGGCAGCTGCTGAGTGACCCGCATTCATCTTTGTCTCATCATCTTTATTGGGTTGGCCAGCTGAATGAGCTGTACCCTTACCCGCTTTTATCATTTCAACACTTTCCCCTTGATTACTCGGGCCACTTTCACTTAAAGTTTCATCATTTGTCTTGGGCCGCTTCTCTGATGTTTTCTTGTCTTCCTTCTTTAGATCCTCTTCTCTTTGGCGTTTACGCTGATTCCTCTTGATAACATAGCGCTTATATAATTTCTCAAGAAAAGATAATATAACACAACCCATCTTGTGTTGAAGCATTTCACTGAAAGACTCGGCAAACAAAGAAAGCTCAAATACTGACTCCTCCAGATCGTTGGCCGTATAGTCAAGGAGGCCATCCAATGAAAGGGATGTTGATCGGACTTTAGAGTCTTTACTCCTTTTGGCCTGAAGAATGAATCCTGGATGTTTGGGAGGCTCATCAGATTTCTTTTTTTCTTTAGTATCAGTGAGTGACTTTTGCTTTGAATCCGTCTTCTGATCTCTACTCTTTTTCTCTTTATCATCCTTTGCCTTATCATTTTTCCCATCTTGCTTTATATCCTTTTGTTTTAGAACTTCCTGCTGCTTAATCTTATCCCCATTGGACTTCTGGTCAACAGGCAACGACTGCCCCTTTTCCTCCTGTTCCTGTTCTTTATTCTGTTTTGAGACATCTTCAGCTGGAGCTTTTGAAGCTTCTTCAAGTTTAGCCTCTGAAATCACAGCACCACTCAAGACTTCATTATTCTTCTCTGGCTGAACCTCCACTGCTTGCTTACTTGTTTCAGCAGGGGCAGTCGAATCACGAGCTGACCCAGAAGGCTTTTTCTTAATAATCCTTCTAATTACTTTCTTCTTTCCAGGTTTCTTGCCCTCAGCCTCTTTTCCAGCATCCTCACTTTTTTGCTGGACTTGCTCTTCCACAGCTACACTTGCAGTTTCTGGTACAATGTTCTTGTCCTCCTGAGATGATTTACCAGCTGAAGTTTCACCAGTTGGTTTTTTTCGAACTACTTTCACAACCTTTTTTATCACTTTCTTTTTCGTGGGCTTTTTATCCTCAGTTGCATGGTCAACAGAAGCTTCACCTGAAGTGTTCCCTTCAACACCCCCACCCTTCTTCTCAATGTGTTCCTCGACTTTATCAATATTTTTTTCCTCAACTTTACCAAGATTTTGTCCATCATGCTCGGCAGGTTTCTCCTTTCCATCTTTACCCAGCAGATCCATATCATTATCAACTTTCATATTTTCAGCAGCATTGTGGCCAGCATCCTCCTTTTGATCAACATCAGTACTTTTACCCTGGCCTAGTTCTCCTTGCTTCTGTTTGCTTGCATCAGTTGGGCTCTTCTCCTTCTTCATAATCAGCTGCTCCTTTTCTGTCCTTGATTTCCTATATGCAGTCCAATTTTTCTTCCATAAATCCACTGAAGGTAAGCATTCTGACAGGTTTGGCACAAAAACTACAGTGATTTCTTTGTGACTGAAGAGTCCATCTTTGCCAACCCTGTTGTAATGGATCTCAAGAAAACGGTTCCACTGGGTACAATTAGAGAGATCAACTTGAACCAGTTCCTTAACATGTCTGATAGCAGTCTGAATCAAGCAAGAAGGGTCAACTACAGGGTCTCCACCGTCTATTGCTGCATTCCAAGGGCCCCCAATTGCAAAAAGTGAACGATCCCTCTTGAATACAGCAAATTTCAAGATATTGTTCAGATGCACCACTCGTTCATCTGTACTTCTCAATGACGTTATGTCAGCAAAGGCACTGTTGCTCATGCCGCTCATCAAAAGCACCTTTGCATTCCAAATGATTTCGGAAATCTTGGTGCTTGATGTTTTCCCAGAGGTAATCACTGATCCTTCATCAGTACTATCATCAACTTCATGGATGCCATGCTCCAAACTCACAGGTGTGTGCAGCGAAAGATTTAGGCTTTCTTTAGTCCAATTGAAGACAATCTTAGAAAAATCTGGAGCAATTGATAGCCTAGGATATCTTTTTGTCAAAGATAAATAGTCCCTCTCATTATCCACCAAGCGAAATGGCAAAACCTTGCAAATATATTCTCTCTTTATTTCTTTAACAGGTGAACGATGCCTATGCACAGCATCACGCCGAGGTGAAGGTCGCCGCAAAGGCTTCTCAGCTCTAACAGAAGAAGAACGCCGCCGATCACCAGGAGTTCTAGGTGGAGTGTGCTCCCTCCTTGAATCAGCAGGGTGCTTCCTATCCCGTTCCCTCTCCTTCATGCGACGTTCACGAAGACGTTCTCTTTCACGTTCAAGTTCCCTTTCTCTTTCACGTTCTCTTAGTCTTTCACGGTCCCTTTCCCTTTCACGCTCTCTTTCACGATCTCGTAGGTCTCGCAGCTCTCGTTCCCGTTCACGGTCACGTTCCTTTTCTCTTTCCAGTAATAGGTCCCTTCGACGTTCTTCATCTCTTAGATCCAGTTCACGACGATAACCAACCCGATCAACAGCACGTTCATCAACCATGGAGATGCCTGGATGTACACGGGATAAAATGCTATCTCGGTAATCAGAATCCGAAGAAGGATGGAGAAGACCTTTCCCTGAGGCATAGTCCCGTCCAGGGGGCAGACCCATCCCATAACCGCTGCTTGATGACCCTTGCCCATAGGAGAGGCTATCAATGTTTGTCCTAGGAGCTCCTCCCAACAACGAAGCTGACTGTTGTCCTCCATATGGGGCGGTCCCAAGAATGGACAAGTTGCGATGATCAGCTTCAACTCTTCCATATGCACCAATATCCTGCGATCCTTGATGGATTGGAGCAGACCTTCCTGCAAAGTAATCGGCTTGTCTTATATCAGATCCAGACTGCAGTTGGGGTTTCAGCAGCTGTGGATGGCGCATTGATGAACCCTGATGGCCTCCAGAAACATGCTCGGGATATCTTCTATCCAAATCAGTAAGCCCATCTCTCCTGCCAAGATTAGCTGAGTGATCACCATACATTCTTCTCTCTAATGTATAATCACTACCATACTGGTCTAGCTTTTGTCCATAACCACGCACAGCCATATAGTCATCATTTGGTCTTGCTATGCTGGACCCTACAGATCCAGACGAGAACTTGGATGGCTCAGGCAAATTAGGAATACTAGAAGAAGCCGGACCTTTGCCACCAAGTCCACCAACCTGCTGTGTGCCGTACACTGAAGCGTAAGGCCCTCCATACTGCCCAGCTGCACCCTGCCCGACACGGGCGCCAAATCGACTACCATCAGCACCACCCGTTGCTGCCGAGGACGAAAATCCACTGCTGCCAGGGATTTGGCCATAGGATTGCTGCCCTCCGTAACTTTGCTGCTGCCCATAGGGATTGGACCCTTTCGGCGGAAACATGGCGGACGCCCCGCCCGCCTAGGGTTTGGCCGACCCCCCCCAAATAAAAAAAAAATCCGCGACCACCCGCCTCCCTTCGAGATAAACCTGTGTGGTGGGGAGGGGGCGGACGAAGCGACGGCGATGCGCGCGGTGAGAACCTGCGTCCCGCGGCTCCAGAGGAGGACGGGCGGTGACTCCGCCGGTGGGATAGCGGCGGCGGCGGCGGCGGCGGCGAGGAAGGGTTAGCGAGAGAGAGAGCGAGGAGGGGGTCT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0348800.1 | 6 | 21610621 | A | G |
| Osa06LNT0348800.1 | 6 | 21614587 | A | G |
| Osa06LNT0348800.1 | 6 | 21607290 | G | A |
| Osa06LNT0348800.1 | 6 | 21607653 | A | G |
| Osa06LNT0348800.1 | 6 | 21607930 | T | G |
| Osa06LNT0348800.1 | 6 | 21608012 | C | T |
| Osa06LNT0348800.1 | 6 | 21610089 | A | G |
| Osa06LNT0348800.1 | 6 | 21610370 | C | G |
| Osa06LNT0348800.1 | 6 | 21611208 | A | T |
| Osa06LNT0348800.1 | 6 | 21611463 | G | A |
| Osa06LNT0348800.1 | 6 | 21611869 | T | C |
| Osa06LNT0348800.1 | 6 | 21612824 | A | G |
| Osa06LNT0348800.1 | 6 | 21613170 | A | G |
| Osa06LNT0348800.1 | 6 | 21613648 | T | C |
| Osa06LNT0348800.1 | 6 | 21613736 | C | T |
| Osa06LNT0348800.1 | 6 | 21614900 | T | C |
| Osa06LNT0348800.1 | 6 | 21615306 | C | T |
| Osa06LNT0348800.1 | 6 | 21616302 | C | T |
| Osa06LNT0348800.1 | 6 | 21616396 | A | T |
| Osa06LNT0348800.1 | 6 | 21616770 | A | C |
| Osa06LNT0348800.1 | 6 | 21617115 | A | G |
| Osa06LNT0348800.1 | 6 | 21611630 | G | C |
| Osa06LNT0348800.1 | 6 | 21615426 | C | A |
| Osa06LNT0348800.1 | 6 | 21610818 | T | C |
| Osa06LNT0348800.1 | 6 | 21611561 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0348800.1 | osa-miR5539a | Cleavage | 4.0 | 9.343 | 1 | 22 |
| Osa06LNT0348800.1 | osa-miR812s | Translation | 5.0 | 10.726 | 1 | 24 |
| Osa06LNT0348800.1 | osa-miR5799 | Translation | 3.5 | 10.726 | 1 | 24 |
| Osa06LNT0348800.1 | osa-miR5826 | Translation | 5.0 | 16.021 | 1 | 24 |
| Osa06LNT0348800.1 | osa-miR6253 | Translation | 3.0 | 12.273 | 1 | 22 |
| Osa06LNT0348800.1 | osa-miR5539b | Cleavage | 4.0 | 9.343 | 1 | 22 |
| Osa06LNT0348800.1 | osa-miR159a.1 | Cleavage | 4.5 | 13.337 | 1 | 21 |
| Osa06LNT0348800.1 | osa-miR159b | Cleavage | 4.5 | 13.337 | 1 | 21 |
| Osa06LNT0348800.1 | osa-miR159c | Cleavage | 3.5 | 13.337 | 1 | 21 |
| Osa06LNT0348800.1 | osa-miR159c | Cleavage | 5.0 | 15.498 | 1 | 21 |
| Osa06LNT0348800.1 | osa-miR159d | Cleavage | 3.5 | 13.337 | 1 | 21 |
| Osa06LNT0348800.1 | osa-miR159e | Cleavage | 3.5 | 13.337 | 1 | 21 |
| Osa06LNT0348800.1 | osa-miR159f | Cleavage | 4.5 | 13.337 | 1 | 21 |
| Osa06LNT0348800.1 | osa-miR319a-3p.2-3p | Cleavage | 5.0 | 14.467 | 1 | 20 |
| Osa06LNT0348800.1 | osa-miR319b | Cleavage | 5.0 | 14.467 | 1 | 20 |
| Osa06LNT0348800.1 | osa-miR408-5p | Cleavage | 5.0 | 2.984 | 1 | 21 |
| Osa06LNT0348800.1 | osa-miR444b.2 | Cleavage | 4.5 | 21.683 | 1 | 21 |
| Osa06LNT0348800.1 | osa-miR444c.2 | Cleavage | 4.5 | 21.683 | 1 | 21 |
| Osa06LNT0348800.1 | osa-miR1438 | Translation | 5.0 | 15.784 | 1 | 22 |
| Osa06LNT0348800.1 | osa-miR812g | Cleavage | 3.0 | 10.726 | 1 | 24 |
| Osa06LNT0348800.1 | osa-miR812g | Cleavage | 5.0 | 9.093 | 1 | 24 |
| Osa06LNT0348800.1 | osa-miR812h | Cleavage | 3.0 | 10.726 | 1 | 24 |
| Osa06LNT0348800.1 | osa-miR812h | Cleavage | 5.0 | 9.093 | 1 | 24 |
| Osa06LNT0348800.1 | osa-miR812i | Cleavage | 3.0 | 10.726 | 1 | 24 |
| Osa06LNT0348800.1 | osa-miR812i | Cleavage | 5.0 | 9.093 | 1 | 24 |
| Osa06LNT0348800.1 | osa-miR812j | Cleavage | 3.0 | 10.726 | 1 | 24 |
| Osa06LNT0348800.1 | osa-miR812j | Cleavage | 5.0 | 9.093 | 1 | 24 |
| Osa06LNT0348800.1 | osa-miR2099-5p | Cleavage | 5.0 | 12.737 | 1 | 22 |
| Osa06LNT0348800.1 | osa-miR5144-3p | Translation | 5.0 | 16.909 | 1 | 21 |
| Osa06LNT0348800.1 | osa-miR5338 | Cleavage | 4.0 | 18.679 | 1 | 21 |
| Osa06LNT0348800.1 | osa-miR5338 | Translation | 3.0 | 13.301 | 1 | 21 |
| Osa06LNT0348800.1 | osa-miR5505 | Cleavage | 4.5 | 14.65 | 1 | 22 |
| Osa06LNT0348800.1 | osa-miR5522 | Cleavage | 4.0 | 12.415 | 1 | 21 |
| Osa06LNT0348800.1 | osa-miR159f | Cleavage | 5.0 | 15.498 | 1 | 21 |
| Osa06LNT0348800.1 | osa-miR159a.1 | Cleavage | 4.0 | 15.498 | 1 | 21 |
| Osa06LNT0348800.1 | osa-miR159b | Cleavage | 4.0 | 15.498 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0348800.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0348800.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0348800.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0348800.1 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0348800.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0348800.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0348800.1 | 6 | gw6 | Morphological trait | Panicle/flower | RG424 | R2549 |
| Osa06LNT0348800.1 | 6 | RPLD4 | Physiological trait | Eating quality | RG424 | RG172 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)