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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0349000.1

GCCCAATCTATTTTTAGATACCTATTATACTTGCCAAATTTCATAAATCAGTATAACGTAGTCAGATAAAAAAAATGCAAATAGACATGGTACATACCATTTACCACATAAACATACTGGAGCGAAGTTACTATACACTGCAACAACTACATGTATCTCAATCCCATGATACGACCACTGATCAGCACCTTAATCTTGGAATACCGCCAATTTGAGTGCAGATGTATGTCAACCTAGTTTTCCCAAATTGATCCGTACTTATATATTGTCCATGCTTATCTTACATGTGGAATATTTCTGTAAGAAACAATCAAAATCTGCCATATATATAATCCCTCTAACATGAATGAAAATAACAGAATGACAATAAAAAGCACTATTTAGCCTAGTATTAACTAAAGAAAGCAACAGCCTAGTGAATACAAACCTGAAAGTCATTAAGCTCCACATCACTGTGTGCTTCCCTGTCATGGTCACATAGACTAAATATCTGCTACAAAGCCCTCACAAACCGTCGCTTTAGAGATTGTGCCTCTTATAAAACAATGGAGCTATTGGGTTAAGCATAGCCTTTTCAGCATAGTAGAAGACCTCAGGAACCTGCAAATATCCATAAATTATATTATATAGTTAATCCAAGCCTTGCACAATATTTGGAATTCTATCTCAGGGAAGGCACTGGTTAAAATTATCAAGTGCATAGTACAGTAGATGTTTGATCAAGTTACACAAAAAATTATCAAGGCAGATATGGGCAGTACACGTAGTACATTGTTAGAGATGGACAGTACTGTGTTCTCAAACTGAGCATCAGGAAAATTAGTGATCCAAATTTATTACTAAAGCCCTGAAAATCATGTATTAATTCCATAAGACTACAGAGCATTTCATCAAGCTGTAGCAATCAAGTTGTGTACATCAAAATAGCAGGCAATGCAATTAACCATGCATAAATGCAACAGTGGGATTTAGCTTGCACAACAACATGTATCTTCCATCACAGTATCAACACAGAGTCAGGAATGAAAAAAATGGGATTTAACTTGCACAACCAAATCATTATAGCTTCATGTGCCAACTCTTTCCCCTTAGCCTTCTATGTAACACATGATTGGAAATATGTGTAAATAGAAAAAAAAATGTCTTATACCAAGGAATTTTAGTGCGAGTAGTTTTTTTTACAAAAATGTGGAGTAGGAAGCATTCCTTCCCTCCCAAATCACAGAAAAAATATACACTCTCCTGCTGAGGATTTTATACATGAAGGAATACAAAGGAATGTAAGAAATATTAACAAATATAATGCCGAGTTGATGCCAGGAGTGTATCGATCTTAGAACTGCTTTGATATATCGGGTTCCCACCCACCTAGTACGCGACAACTGTTTAGAAATTAGAAGAGTATCAAGGTTTGACATCCACCGAGAATTTTGAAAACAAATTACA

Coding Potentia
Explanation CPC Score
noncoding -1.3837
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0349000.1 osa-miR812v Cleavage 4.0 15.629 1 24
Osa06LNT0349000.1 osa-miR2870 Cleavage 5.0 12.654 1 21
Osa06LNT0349000.1 osa-miR2878-5p Cleavage 3.0 9.972 1 24
Osa06LNT0349000.1 osa-miR5149 Cleavage 5.0 11.319 1 22
Osa06LNT0349000.1 osa-miR5494 Cleavage 5.0 11.254 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0349000.1 6 RPLD4 Physiological trait Eating quality RG424 RG172
Osa06LNT0349000.1 6 nan Physiological trait Eating quality RM253 RM162
Osa06LNT0349000.1 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0349000.1 6 asv6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0349000.1 6 tgw6.1 Physiological trait Source activity RG264 RM3
Osa06LNT0349000.1 6 ph6 Morphological trait Dwarf RZ667 RG653
Osa06LNT0349000.1 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
Osa06LNT0349000.1 6 gw6 Morphological trait Panicle/flower RG424 R2549
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus