>Osa06LNT0349300.1

TTAAATCTAAATTGTACCATTGAATATATAAGGGACGAATGGTCAAACGTTGGCGTCGTACATTTTAAAAAAAAATACTACGATGTTCATGATAAATTTAATTTCTCCCCTAGCAGTGCACATACATTTTTTTCTAGCATATTAAAAAACCAGAGGTAGTATATACCATTATATTTTTAATATCACTATTCATCCTGCAAAATACGTTCGAGAATATCATTAATTCTTCATCATGCATGGAACTGCTTCTTCTAGCTCACATCCTTCCTCTGGGCTTGAGGTGGACATGCAGCGGGTCAAGCTTCAAGGCGGTGAACTGCATGGTGTCCTCCTTGTCCCCGTCGCCCTCCCTCAGCCTCCACTCGAGCTCCTGCACGAGGCGCGCCACGGCGACGCACGCGATGTTCATCGCCTGCAGGCTCCCCGCGCAGGTCCTCCTCCCGGCGCCGAACGCCATCGTCTTGTACCTGTCCGCCACCTCGAACCCCTCGCCGAGGAACCTCTCCGGCGACCACTCCCCCGGCGACTCCCACACCTTCTCGTCCATGTGGCACGCGTACACGTTGATCATCATCTGGGTGCCCGCCGCGATGTCGTAGCCGGCGAGCGTGGTGTCGTCGTGGACGAACCTCGGGGGCAGCACCGGCACCGGGGAGTGCAGCCGCAGCGTCTCGTGGAACACGGCGTTGAGGTACGGCAGCCGCGGCAAGTCGTCCTCGGTCACCGCCTCGCCGCCGCACGCCTCTCGGATCTCTTGGTAGAGTAGCTCCTGATCGATGTGCCAAGAACAAGAAACAATCAATTGTTTATTAGTTTGGTTGGCAACAAAATGCTGAAATGCATTTGAAAGAAAGAGGGATTGAGATCCTCTGACTTTCTTTCTCGTAAAGTTATAGAGACATGATCGCTGACATGTCAATGACCATATCAAGAGAAAGTTATGTCAGAGGATCACAATACAATACAAGAAAGAGTATATACAAAAGATAATTGAAAGTACTCCCTCCGGACAAAATTAATTGACGTTTACGACAAGTTACAAAGAAAACATGCTAAAACATGTGTTGTCCGAAACCAAAAAATAAAACTGGAGGTAGTATCAGTTAATTTCTTGCCTGTTTGTCAGGGTTCTTGGCAATCTCATACATGGTCCATTCGGTGGTCACCAGGACAGTATCAGCTGCAGCCAGGATGGACTCCGACAGCAGCAGCATCAGTTGGTCATCTGTCAGCTGTGCACTCCTCTCAGCTTCCAGCAAGAAGTCAATGTAGGATGCCCTTGCCTCTCCGCGTGCAATCCTCTCCTTCTGCTTCTTGATCAATGCATTCATGATAGCATCTCGTCTGAATTCTGTAGTAGACACAATTGTGTCGAAGCTCTTGTTTGGAAGCCAGCTGAGGTAGGGGAAGTAGTCCCTCCAGTCAGCCTCAACTGCACACATCATCATCTCATGCACAAGGACATCAAAGATTTCGTCCTTGGATATCTCCCTCCCAAACTCTTCCACATAAACTGAACTCACATCCTCACCTAAACTCTGGATCAAGGACAAGCTGAACAGCTCATTAATGTAAACATCCCTGAAGTTCAGAGGGGAATGTGGGTCAAGAGAAACCAACTTATGCAAAGTGCTTAACACGTTACTGATCATCCTCTCTCTTGTACCGCGAAACTGTTTCTGTGCATTAAAACCTAACATGCCAATCATAATATTACGCTTCGCCATCTTTTGGTAGTCACCGTAGTCGCTGATTGCGACCATACTTTTACGAGTTAGCACAGACATTGCTTTTGGTAGCTTTCGAGTAGATATGGATGAGAATTTGTCAATCATCGCCTCCTTGGCTACTTCAGTTGAATTGAGCACAACCACTGGAGAAGCTCCGGTCTTTATAGTGTAGATTGGTCCATAAGTTTCAGACCATTTTGCAAACGTCTGATGAGGCTTCTTTTCTTTCAATTGATGCAGATTTCCAATAATGGGTAAACCAGGAACAGCTGCATTACAATAACTAACGATGTTATTACTAAAGCTCTTGTAGTGGACTGAAATTAATTTGTTTTTGGTAATTCGTCTCTGCATAAATGAAAACACCAAACATTCAAGCAAGTAATTTAACATGTACAGGTTCTATATTTCCTTTTATTGGGTCATTTTTCAGTAAGAATGCTAGCTATGTACATGGATAGATGATGGACAGATGGAGTAAACAC

Explanation	CPC Score
noncoding	-1.08461

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0349300.1	6	22021846	C	T
Osa06LNT0349300.1	6	22021868	A	G
Osa06LNT0349300.1	6	22021901	T	C
Osa06LNT0349300.1	6	22023115	C	A
Osa06LNT0349300.1	6	22023501	C	T
Osa06LNT0349300.1	6	22023850	A	T
Osa06LNT0349300.1	6	22023956	T	A
Osa06LNT0349300.1	6	22024006	G	T
Osa06LNT0349300.1	6	22024211	G	C
Osa06LNT0349300.1	6	22024694	C	A
Osa06LNT0349300.1	6	22021580	G	A
Osa06LNT0349300.1	6	22020952	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0349300.1	osa-miR5827	Translation	4.0	18.554	1	21
Osa06LNT0349300.1	osa-miR1426	Cleavage	5.0	24.967	1	21
Osa06LNT0349300.1	osa-miR1879	Translation	5.0	19.418	1	24
Osa06LNT0349300.1	osa-miR2093-5p	Cleavage	3.0	17.162	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0349300.1	6	amy6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0349300.1	6	asv6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0349300.1	6	tgw6.1	Physiological trait	Source activity	RG264	RM3
Osa06LNT0349300.1	6	ph6	Morphological trait	Dwarf	RZ667	RG653
Osa06LNT0349300.1	6	qLDLJ-6-1,2,3	Physiological trait	Source activity	RM217	RM3
Osa06LNT0349300.1	6	gw6	Morphological trait	Panicle/flower	RG424	R2549
Osa06LNT0349300.1	6	RPLD4	Physiological trait	Eating quality	RG424	RG172
Osa06LNT0349300.1	6	nan	Physiological trait	Eating quality	RM253	RM162

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus