>Osa01LNT0001900.1

GGTTTTTTTCGACAACAAACATCTCGTGGATTGAGAGTTCATATTGGTTTCTTGCACAGATTAATTGCAGAGCAACAAGAAGATTGGGGGAGAACATGGCACTATAATCGAATTAAAATATACCAAAAGATCAAATTAAAGAAAAGAACAGTCAAACCCACTAGATCCCTGAAAAAAAACTGAATCTCACCTAGCTGTCAGAATCTTCAGAGCCCCCTTGATTCTTCAGCTCGGCTTCTCAGACACGAGATAACTGAATCGAACCATGGAAGAAACAGGAGGAAATACGGAGAGGAAGAAAGAGTCTTGAGAGAGGAGTGGCGACGCGGAGAGAGGAAATACGGTGAGAGAGGAGTGGCGGCCGCTGAGGCAAGCCACCGCCGTCCTCGCCCGCCTCGGGACGTCGCCGAAGTCCAACTGCCTCCACGCTGAGTGCGCAAGCGCTGCTCTTCCAGCCCCCAGGACAGGAGCAAGCGAGCGGCGGCCCCGAGTCGTCGTCGTGCTCCGCGTCGCCAACCGCCGCCCGTCGCGCCAGCCCTCCTCTCAGCCGCGCTCCTCCCCTGCCGGCCGCCGGCACGCCCGCCGCGCCGGCACTCCTCCCCTGCCGAGTGCTGCTCGAGAGGAGAAAGAGAAAGAAAAGGAA

Explanation	CPC Score
noncoding (weak)	-0.974333

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa01LNT0001900.1	DTM_#DNAt_MULE_japo_Os0037	Chr1	-	1926356	1927776	642

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0001900.1	osa-miR2097-3p	Cleavage	4.5	20.865	1	22
Osa01LNT0001900.1	osa-miR2098-3p	Translation	5.0	22.263	1	20
Osa01LNT0001900.1	osa-miR2921	Cleavage	5.0	14.519	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0001900.1	1	gp1a	Morphological trait	Panicle/flower	RM1	R753
Osa01LNT0001900.1	1	nan	Physiological trait	Source activity	RG532	RG472
Osa01LNT0001900.1	1	qFLL-1	Morphological trait	Culm/leaf	RZ543	RG532
Osa01LNT0001900.1	1	qFLP-1	Morphological trait	Culm/leaf	RZ543	RG532

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus