Transcript

Sequence

>Osa06LNT0349800.1

GCATCTCAAACAATAGGTTGTCTGGTAACATCCCATCCGCTCTTGGTCAGTGTGTGATTCTTGAATCTCTTGAGCTGCTACTCTCGGAGTTCGAGCTGCCACCGAGCGCCGGCGTTCCTGCGGAGGGAGCCCGGTCCGCCGGCGTGGGGTCGTCTCTGTCTCTCGGCTTGGCTCTATCTGGGCTTGATTAAATCAGGGGCTATCATCCAGTCAAATAATGGAAAGAAGTCCACCTTCTCGACTGCTTCCTCAGTTCCCAAAATGTATAACTAGGATGAGGTTCTATCCAG

Coding Potentia

Explanation	CPC Score
noncoding	-1.07515

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0349800.1	6	22953384	T	A
Osa06LNT0349800.1	6	22953431	T	C
Osa06LNT0349800.1	6	22953670	G	A
Osa06LNT0349800.1	6	22953795	G	C
Osa06LNT0349800.1	6	22954078	T	C
Osa06LNT0349800.1	6	22954309	C	T
Osa06LNT0349800.1	6	22954405	G	T
Osa06LNT0349800.1	6	22954604	A	G
Osa06LNT0349800.1	6	22954724	C	T
Osa06LNT0349800.1	6	22954768	G	C
Osa06LNT0349800.1	6	22954798	A	G

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0349800.1	6	nan	Physiological trait	Eating quality	RM253	RM162
Osa06LNT0349800.1	6	amy6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0349800.1	6	asv6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0349800.1	6	tgw6.1	Physiological trait	Source activity	RG264	RM3
Osa06LNT0349800.1	6	ph6	Morphological trait	Dwarf	RZ667	RG653
Osa06LNT0349800.1	6	qLDLJ-6-1,2,3	Physiological trait	Source activity	RM217	RM3
Osa06LNT0349800.1	6	gw6	Morphological trait	Panicle/flower	RG424	R2549
Osa06LNT0349800.1	6	RPLD4	Physiological trait	Eating quality	RG424	RG172

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus