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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa06LNT0350000.1

CACCAATATAACATCACGTGGATATTTCTTTATGAATGCAGAATGGTTAGCGACATTATTGGAAGATTTGGTGGTAGCACGGGCATCCCTACTCTTTGAATGTTGAAACCTTTTATGGTTTGTTCTGTGCGACTTATTCCTTCATCGTCTAATCTCTATGAAAAAAAAACTAGGCCGTTTTCGTGAACTGATGAGAGGAATTGGGAGAAAAAAGTTAAGACATTGCAACAGAGGAGAGAAGAGTGGACGTACAGTAGCAGAGAAGAGAAGTGAAGATTAGGAAGGCACCAGAGACAACAAGCATCCAGGTGTGCCACAAATAGTTGCCTGTAAATCAGAGCTCAAGGACATTAGGGAAAAAATTGGACAGATTAGAGAGAGCATACAGTATATGCCAAATATATAGACAAAGGCGCAATGCATGAATATATAAAAGCATTTATAATCAAGATTTACAAATCCGATCCCAATAGAAGTGTGGATGCCTCGCCGCGAAATCCGCGGTGTCGACCATGGCCTAGTGGGCACCGTTGTCCCTGTTCGCAATTCACCATCGCCGGCTCACCATAGCGAGCTGCAGAGAAAGGGGGGTAAATCCGGGGGGCGAGGCCCCAGGGGGAGAGGGTAGCCAGCCGCGGGCGTCGGCGGAAGTGGAGCGGAATGCGGAAGCCGGAAGAGCTGCCGGCGGCGGAGGATTCATCAGCCGCCGCGGTCGTCTTCTTCTTCCGTCCGCTAGCCTAGCCATCCTGTACGGAGGGGCGGCGATGTACGGGACGAGGGAGCAGCGTTGGAGTAGAG

Coding Potentia
Explanation CPC Score
noncoding -1.27967
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0350000.1 osa-miR5539a Cleavage 5.0 20.598 1 22
Osa06LNT0350000.1 osa-miR5539b Cleavage 5.0 20.598 1 22
Osa06LNT0350000.1 osa-miR319a-5p Cleavage 5.0 21.28 1 21
Osa06LNT0350000.1 osa-miR2097-5p Cleavage 5.0 17.432 1 22
Osa06LNT0350000.1 osa-miR2118b Translation 4.5 12.359 1 22
Osa06LNT0350000.1 osa-miR2118e Translation 4.5 12.359 1 22
Osa06LNT0350000.1 osa-miR2118g Translation 4.5 12.359 1 22
Osa06LNT0350000.1 osa-miR2118h Translation 4.0 12.359 1 22
Osa06LNT0350000.1 osa-miR2118k Translation 4.0 12.359 1 22
Osa06LNT0350000.1 osa-miR2118n Translation 4.5 12.359 1 22
Osa06LNT0350000.1 osa-miR2118r Translation 4.5 12.359 1 22
Osa06LNT0350000.1 osa-miR2864.1 Cleavage 5.0 24.201 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0350000.1 6 tgw6.1 Physiological trait Source activity RG264 RM3
Osa06LNT0350000.1 6 ph6 Morphological trait Dwarf RZ667 RG653
Osa06LNT0350000.1 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0350000.1 6 gw6 Morphological trait Panicle/flower RG424 R2549
Osa06LNT0350000.1 6 nan Physiological trait Eating quality RM253 RM162
Osa06LNT0350000.1 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
Osa06LNT0350000.1 6 RPLD4 Physiological trait Eating quality RG424 RG172
Osa06LNT0350000.1 6 asv6-1 Physiological trait Eating quality RM3 RM217
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus