© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0350900.1
GGCTAAATCTCAATTTTCTCCTCTATTCTCTCCCCGTGGTGCTCCCGGCCCGGCCGGCCTCTCAGGCGAGCCGCCCCTCGCCGCCGGCAACGAGCTTCGCCGCCTCGCGCGTGGCGGCCTCCGCTGCGCCGCGAGGGTCCTTATCCTCCTTTATGCCTCTGGTTAAGGAATCTGGCTATTACTCTGCAGCCTGAAAGACTTTCCTGCCAATATATTTTGAGCTGGGAGAAACCCTTCCTAAGGTGTTCCATTGGGTGATGGCAGTAGAAAGTGTGGCCAGATTGATGATGATTTCAAGAGCATCCGTCTCACGTCCATTGCTTCTAAGCGGAAGCTAGCAGTAGAAGAGCAAACCGTTGCTGAAATTGTAATTGTTGATGAGAGCTTATGTTCTAGAGGCAGCTGTTTCCCACTTTATCTTATTATCTATATCATGTACTGGCAAGATCAAGAAGTGCAATCACATATGACTTGCAGGGGAGATTCTGCAATGATCTTATGCCTTCCCCCATGAGTATGCATGGAAGCCATTTGGCAGTATACAATGGAAGATAATGTTTCTTCTGATGCTAGATATCAGCTTACGAAACAGATATTTCAATAGTGATTGACAGCTTGGTAAGGATTCATCATTTTAAAACTGCAGTGGAGTTCCTTATCTCAGGAGTCAAGAGAACTTCAGGATTAGAAACAAGTGTTCTTTGACACAGATTTACAAGTCAGCTGACTGATCTTGCCAATGTGAATCCTTGCGACATTCTATATCAGTTTTTCTTGGTCTTCTCAGGAGTCAGGAGAACTACAGGATTAGAAACATGTGTTCTCTCACACACAGAGTCACAGTAAACTGACTGATCTTACAATGTGAAACCTAACGACATTCTGCATCAGTTTTTGATGGTGCTGATTGTAGATTGCTGATGGCCAAGGGGATTTAGTTGAGTGCCAGGCCATGCAACACAACACATTCAAGCCATTTCTCTGTCCTAGTTTTTTGATATTCAGCATTCAGCTCATTTATCTTTCTTAGCCTGTTGACAAATTTTCAGTAGTACTACAATATATACCTGTGGGAATCCCTAGACCGAACAAACAAGTTATATATGCAGTAAGCTGGTCACCACTCTGGAGTTCTCGAAGAAACATATGTTATAATAGCACTCCTAGCAGTCATGTTTGTGGATTCTAGAATAAGAACTTCTTCCTCATATTTAATTAGTGTTTCTAAAGCAGATAAACTTGAAGCAAATCCGTGCTACTATGTTGAAAAGTTGCTTCCGTCCATGGCAAGAGGACAGTTTGAAAGTGCCAATAGAGGAGATACTTTCAACTGTTTCTACCAGATCATGAATCTTAAAAGTATGGTGGGTCTTTTTTTAACTGGTTGAATTCTACCAGTGAATATCTTCAGCAAATTGCAAGAGTACCTTGAATAGGTGATTAGGATATGCCAATTTTCTTTATGATGAAATGAAGACTGGAAGCTTTTTCAGAGAGAGCTTGTTCAGGTTTTGAAAGCCTGCAGGATCCACAATTCCACATGCAACTTTTATAGCATATTTTTATATGAAAAGTATAAACTATCTGGCGCATATTTCTTGTGTCTACATGAGTCAAATAAAAACGCCACTTGACAATGACATTAATGGATTAATTGGCATGTACATGGACCATGTGTTGATCTATTTTAGGTAGATCTGGCGGATGACAGTGTCAAGAGCGCAGCGTAACTTGGTGCTATATGCTTTACAATCTTAATTAAGATGACATCACCAGATTGATTCGAATGAGATTGAAGCAAAGGGCAGAGTTAATGTTGTGGGGACCGATACAGCTATCCTACTGGACATATTCAATGCATGCTTTTGCAACATGGGAGGTCCTTAACCAGCTACTGTGGCACCACAAGGAATTGGTGTATTTCCTATTAATAAACTAGGTGGTTCCCTTGATGAAAGTGAGAAGACAGAACAGAACCAGAACATTGGAAGCTTTCACCAGTATGACTATAATGACGGGGACGTCTTGTACATACAAATGACGAGGCTACCTTCACCACCGTGCAGCAGCCCATGTGACGGCGAGCCCGGGCCGCTCCTGCCCAGCAGCTCCTCGATCATCT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0350900.1 | 6 | 23891839 | C | G |
| Osa06LNT0350900.1 | 6 | 23892236 | T | G |
| Osa06LNT0350900.1 | 6 | 23892314 | G | A |
| Osa06LNT0350900.1 | 6 | 23892722 | T | C |
| Osa06LNT0350900.1 | 6 | 23892869 | A | T |
| Osa06LNT0350900.1 | 6 | 23894052 | C | T |
| Osa06LNT0350900.1 | 6 | 23894484 | G | T |
| Osa06LNT0350900.1 | 6 | 23894532 | A | G |
| Osa06LNT0350900.1 | 6 | 23894997 | G | T |
| Osa06LNT0350900.1 | 6 | 23895311 | T | A |
| Osa06LNT0350900.1 | 6 | 23896249 | A | T |
| Osa06LNT0350900.1 | 6 | 23896284 | A | G |
| Osa06LNT0350900.1 | 6 | 23896396 | T | A |
| Osa06LNT0350900.1 | 6 | 23896828 | T | G |
| Osa06LNT0350900.1 | 6 | 23896916 | G | A |
| Osa06LNT0350900.1 | 6 | 23897513 | C | T |
| Osa06LNT0350900.1 | 6 | 23897585 | G | A |
| Osa06LNT0350900.1 | 6 | 23897683 | A | G |
| Osa06LNT0350900.1 | 6 | 23897915 | T | C |
| Osa06LNT0350900.1 | 6 | 23898600 | G | A |
| Osa06LNT0350900.1 | 6 | 23893279 | T | C |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa06LNT0350900.1 | DTM_#DNAt_MULE_japo_Os0610 | Chr6 | + | 23890293 | 23891527 | 19 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0350900.1 | osa-miR5530 | Cleavage | 4.5 | 20.466 | 1 | 21 |
| Osa06LNT0350900.1 | osa-miR5797 | Cleavage | 5.0 | 15.544 | 1 | 21 |
| Osa06LNT0350900.1 | osa-miR6250 | Cleavage | 5.0 | 18.226 | 1 | 22 |
| Osa06LNT0350900.1 | osa-miR419 | Translation | 4.5 | 12.275 | 1 | 21 |
| Osa06LNT0350900.1 | osa-miR419 | Cleavage | 5.0 | 13.041 | 1 | 21 |
| Osa06LNT0350900.1 | osa-miR1872 | Cleavage | 5.0 | 15.54 | 1 | 24 |
| Osa06LNT0350900.1 | osa-miR1879 | Cleavage | 4.0 | 11.554 | 1 | 24 |
| Osa06LNT0350900.1 | osa-miR1881 | Cleavage | 3.5 | 11.845 | 1 | 24 |
| Osa06LNT0350900.1 | osa-miR2118e | Translation | 5.0 | 17.703 | 1 | 22 |
| Osa06LNT0350900.1 | osa-miR2118r | Translation | 5.0 | 17.703 | 1 | 22 |
| Osa06LNT0350900.1 | osa-miR2864.2 | Cleavage | 4.0 | 20.59 | 1 | 21 |
| Osa06LNT0350900.1 | osa-miR5159 | Cleavage | 5.0 | 20.31 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0350900.1 | 6 | RPLD4 | Physiological trait | Eating quality | RG424 | RG172 |
| Osa06LNT0350900.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0350900.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0350900.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0350900.1 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0350900.1 | 6 | nan | Morphological trait | Root | RM4447 | RM5509 |
| Osa06LNT0350900.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0350900.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0350900.1 | 6 | gw6 | Morphological trait | Panicle/flower | RG424 | R2549 |
| Osa06LNT0350900.1 | 6 | prt6.1 | Resistance or Tolerance | Drought tolerance | R2549 | RG716 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)