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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0351000.1

GCGACTGGGAAGTTGGTCTTGGCGTTGCGGCCGCTCATCAGGATGGCGGCCTCGTCGTACGCCCGCGCCGCCTCCTCCGCCGTCTCAAAGGGTGGTTGGGGCCAGCAACAGTAATATCTAGCAGGAGGGATGAGATAAAACTGAACATGTGAGAGATCAGAAATAAGCTGTTAATAAGCCTAGAGAAGGAAGTGAAGAAGACTCTTTGGTGAGATTAGTGGAAGAGAGAGATAGATGGAAAGAGGATGGGGGGCCCTCATGGGCTGCTGGGGTGGGCTGTCGGTGAACTGTGGCGAGCGGCATAACCACCTTCTCTGCCAGTACGCCGGTACAAACACTGAAGCTTGGACAGTGTGTACTACTCCAGAAATGGACTTGATGGGCGTTCGTAACCAAGTTGGCCTGCAATAACTGCCCCAATCAAGCAGCCAATCATCCATCCATCCATGGCGCATCGGCAAGGAAGGCGCACACAGCATTGCAGCAGCAGAAGAACTTGCTCTTCTCTCCGTAAAAAGTTCCATCGGCTCCACACAGATACGTGTGTCAGTGAGTTCCTGCAGGGATGGAAGCTTCTTCTGCTGCTGCTCGTCGTACACATGCACGCACTCCTTTTTTTACATGGAAAAGTGCAGGCAGGTTTGTGGTGGTTGCCAAGGACTGTCAGGACCTGTCGTCCAGTAAAAACCGTTGACAGGGCTGCTTGCTCTTTGTCAGCCTGGCAGACTGCAAGGTTTCACATTTTTGCAGGTAAACGGTGGGGGCAAGTCCGAGTTGGGCGGCTTTGGTTACAGGAAACGGATGACGATGATCAGACCTGCCACACCTCTGTCAGAAACAAAGTCCACAAGAGATGTAGCAGTTGAAGGTAGCAACGTACGTACAAACGTCTAAGGAAGGTGATGGCTCGTTACTCACTAGCCATGCTGCATCAACCGATGGGAATTAATCAGCAAATCAGCTGGCCTGGAGTGAGTGAGTGAGTGAGCTGATCACTGGACCGGGCATTGATATGATCCTCGCATATATGCACACGGATCCACCAACCCTGTGTACACACATAGTGCCCGACTGCGTCGGTCGCTGGCGTGTGATAGCGTGGCCGTGATTGACGTGGCCAATTTCTTGACGATTATCGAGTGCGCGAGCGAGCGGCAGGATATTTTTGGGCTGCAAATGTTCGAGGTTTCGTGGACAATCGATGAACACGGCTGGATCTTCATTTTTCTGTAATTTCTAATAACGTCGTTCCTTTCAATGGGTAAATTGTGAGGATCGATTGGCCAATCAGGCGCACACGTTTTGCTTGCTTGTGCTTTAGCGTAGCTAGCCACTGTTGTCCATAGTTTGATCCATTTAAGAATGGGTCATAGTTCTGTGCTGTGCTGTAGCTAGCCTTAATTTGCTTTGTCAAGTCG

Coding Potentia
Explanation CPC Score
noncoding -1.19675
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0351000.1 6 23899185 A G
Osa06LNT0351000.1 6 23899212 A G
Osa06LNT0351000.1 6 23899356 C T
Osa06LNT0351000.1 6 23899630 G A
Osa06LNT0351000.1 6 23899902 T A
Osa06LNT0351000.1 6 23900256 A C
Osa06LNT0351000.1 6 23900468 T C
Osa06LNT0351000.1 6 23900892 C T
Osa06LNT0351000.1 6 23902527 C T
Osa06LNT0351000.1 6 23903085 A G
Osa06LNT0351000.1 6 23903285 T C
Osa06LNT0351000.1 6 23903701 C T
Osa06LNT0351000.1 6 23903727 T C
Osa06LNT0351000.1 6 23903757 G A
Osa06LNT0351000.1 6 23903760 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0351000.1 osa-miR426 Cleavage 4.5 14.883 1 21
Osa06LNT0351000.1 osa-miR396e-5p Cleavage 5.0 23.833 1 21
Osa06LNT0351000.1 osa-miR396f-3p Translation 5.0 20.74 1 24
Osa06LNT0351000.1 osa-miR2122 Cleavage 5.0 22.514 1 22
Osa06LNT0351000.1 osa-miR812o-5p Translation 4.0 17.93 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0351000.1 6 RPLD4 Physiological trait Eating quality RG424 RG172
Osa06LNT0351000.1 6 nan Physiological trait Eating quality RM253 RM162
Osa06LNT0351000.1 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0351000.1 6 asv6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0351000.1 6 tgw6.1 Physiological trait Source activity RG264 RM3
Osa06LNT0351000.1 6 nan Morphological trait Root RM4447 RM5509
Osa06LNT0351000.1 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
Osa06LNT0351000.1 6 gw6 Morphological trait Panicle/flower RG424 R2549
Osa06LNT0351000.1 6 ph6 Morphological trait Dwarf RZ667 RG653
Osa06LNT0351000.1 6 prt6.1 Resistance or Tolerance Drought tolerance R2549 RG716
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus