>Osa06LNT0351600.3

CAGATGAAACTTCTCTACTTCAAATGGTCATGCAACTGACATGCTCATTTCACACTTTTACACTGTGGGCACAGTAATGAGAGCGGTCCACTGTTCCAACACCACAGCGAAAAAACGTTCTCATGTCAATTGTCAATACAGTTTCAACTCAAAAGCCTACCCAGATCTTAGAAACAATGCACCAGGCTACTAGAACTACTACCCCAAAGACCAGGGGTGGTCACACGCTAAAATTATAGTACATGCCTTCAGATTTACATAATCAAACGTGGAAAATGATAAGGTACAAAATGGCAATTACAAGGATTGCCTGATAGGCTTAGTTGAGCAGTAAGTGATGTTTTCAACCAATGTGTGTACAGTTGGCGCCAAGAGTCAGAATCAGGGGTGCATTTCCTGTCCTTCGTGTCATCCGTGTTCCTAGCGGATATTTCCGTGTTAAGATGTGTATTCACAGTTGTTAAGATGACTTGGTTCTCTTGTGTTGAGCCTGGCCTTGGAGGCACAGCCTGAATCGCTGGGTTAGGCTCTCCCCCATCTCTTGCCTCTCCTGTTTGAGCCTCTTCCATAGAGATCGATTCTTCCTCTCCTTTGGTATAGCGAGCGGTTTCCTTCGTATCCGTCTCAGTGGTGTTGCCAAGGCCCGTAGCGTCATGCTCTTATGCTTATGACTAGGAATTTCAGGGCGCTCGCCTAGGGATGATCCATCACTCGCTGCCCCCAAGGAAGAACATCTTCCCCAGCTCTCTCGGTTTGAACTTGTGTATGAGCAGCACTCCTCATTTTGCCTGTGAGATTTATCCTCTAAATGAGACTCAGCAGTGTGAGTGTCCATCTCAGTGAGGTTATGATTTTCATCCAAAAGAAAATCCAAGTCATTATCTGTTTTAATAGACAACTGATTGACCCTCTCTGTCAGCAATTCAACCACTGATTTTGTAGCATTTGTGAAGTTAGCTGCAGCTGCCGATGAACTGCCTGCATCAGGACCAGCAGCCCTTAGACCATTGATGATTTCATACAGTAAGCTCTCATTTGTTCCAGCTCCAACCTTAAAAGCACCAAGGTTGTAGTACTTATCTAACTTATTTGAGCATACTGAAGGAAACTGAGGTGGGTGTAGAACATTATAGAAGAATATTGAAACAGAATCATAATAAAATTGAGGCCTGGGGGAATTGTGATCGCCATCAAATTTGATTAAGTTTTTGTCCCCCGCATATGCCTGATGAATACGGTCCGTGTGATGGGGCTGAATAAACATGTCATTTGATGCATGTCCAAATAATGCAGGAATAAATGTCTTGGGGGCAAACTGAACAACATCAAGATCCATTATATCAAACTTAGCTCTTCTTTGAATTACACGGCGCATGTACTGCACAGCCATCTTAACCGTGAACTTAGGAACTCGGATTTTGTAAACATCTACAAGCTCCATCATTAAGTCATATAGGTTAGAGAAAGCACTGTCCAAAACCAGACCGGCAATTGAGGGGTCTTCTGCTCCATACAGTAGGCTTGTAACAGCACCCATTGATCGCCCCCAAAGGCCTATGCAAGAAACTTCCTTATTGTTTCGCAAAAAGGACACCGCGCATTTGAGATCCTGTTTCTCATGCCAACCAAGGCTGACATACTCTCCACCTGATAGCCCTGACCCTGCAAAGTCAAGTGTAAAGAGGGTGATATTTGAAGGGAGAAGTATGACAGCTGCTTCATTTGCATCCGCTCTGCATCCACTATTTCCATGGCAGTAGATCACACAAGGAAGGGCAGTATTGTCTGGGATGACAGCAGGAACATAGTGGCTGCATTTTAAGGTCTGGTCTCTTCCGTTCGTAAGTTGCCTCCAAATCTATTCGTTTGTACTTTCTTCCCGCAAGAGTAAACTCCGGTTCCCACAGATACTGATCTGGATTGTACTCGCGGCGGACGGATGACAAAATTTACGAACTGCTCGATCATCGCGCCGCCGGAAGCTCCCCGACGAAGACGCAGCCGCGTAGGATGCTCGCGGCGCTCATGTACCAGGCGCAGCCACAAAGCCCCAACCTCCTCCTATCCCCCTCAGCTTCCCCC

Explanation	CPC Score
noncoding (weak)	-0.409511

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0351600.3	6	24277626	A	G
Osa06LNT0351600.3	6	24279562	A	T
Osa06LNT0351600.3	6	24279939	G	T
Osa06LNT0351600.3	6	24280019	A	G
Osa06LNT0351600.3	6	24281395	T	G
Osa06LNT0351600.3	6	24277492	C	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0351600.3	osa-miR6252	Cleavage	5.0	17.07	1	23
Osa06LNT0351600.3	osa-miR528-5p	Translation	4.5	14.083	1	21
Osa06LNT0351600.3	osa-miR444b.1	Cleavage	4.0	20.716	1	21
Osa06LNT0351600.3	osa-miR444c.1	Cleavage	4.0	20.716	1	21
Osa06LNT0351600.3	osa-miR812k	Translation	4.0	19.099	1	24
Osa06LNT0351600.3	osa-miR812l	Translation	4.0	19.099	1	24
Osa06LNT0351600.3	osa-miR812m	Translation	4.0	19.099	1	24
Osa06LNT0351600.3	osa-miR812n-5p	Cleavage	4.0	18.333	1	24
Osa06LNT0351600.3	osa-miR812n-5p	Translation	5.0	20.109	1	24
Osa06LNT0351600.3	osa-miR812o-5p	Cleavage	4.5	9.339	1	21
Osa06LNT0351600.3	osa-miR5502	Cleavage	5.0	21.0	1	22
Osa06LNT0351600.3	osa-miR169i-3p	Cleavage	5.0	21.035	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0351600.3	6	qLDLJ-6-1,2,3	Physiological trait	Source activity	RM217	RM3
Osa06LNT0351600.3	6	prt6.1	Resistance or Tolerance	Drought tolerance	R2549	RG716
Osa06LNT0351600.3	6	gw6	Morphological trait	Panicle/flower	RG424	R2549
Osa06LNT0351600.3	6	qGL-6	Morphological trait	Seed	R674	R2549
Osa06LNT0351600.3	6	RPLD4	Physiological trait	Eating quality	RG424	RG172
Osa06LNT0351600.3	6	nan	Physiological trait	Eating quality	RM253	RM162
Osa06LNT0351600.3	6	amy6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0351600.3	6	asv6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0351600.3	6	qDLR6-2	Resistance or Tolerance	Other soil stress tolerance	RM1340	RM5957
Osa06LNT0351600.3	6	tgw6.1	Physiological trait	Source activity	RG264	RM3
Osa06LNT0351600.3	6	nan	Morphological trait	Root	RM4447	RM5509
Osa06LNT0351600.3	6	ph6	Morphological trait	Dwarf	RZ667	RG653

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus