>Osa06LNT0351700.1

CACACAGGCTCATTCTGCTTCTACCTTGTCTTTAGTCTTTACAGGATTATTTTCTTATTACAAAACGGAGTTACGGAGGCATGTCCATCAGGAACACCTGCCGCGCGAGTGTGTATGTGGGCTCCGGGGACGACACAGAAAGAAAACACGAGCCAAGCCAAGCCAGGCCAGGCCAGCGCCGGCCAGCCAACAAGCGTTGTGGCGTCTCACACGACATGTCACAACGCGCCTGCCTTCCTGCCGGCTCGGCCGGCGGCGGACGACGCGTCCCGTCGGCAGCTAGCGCCGACGCTGACGTTACAGACAGCCCTGACGTACGAATCCATGATGCGACGGACGCATATGCAGCAGAGATCGATCATCGCCGCCCCCGACACAATGAATATAATTTCGTCAATCATCACCTACGGTGGCGGCTGTCGTCGCCGTCGTCGTCGGCGGCGGCGACGGAGACGATCTCGACCAGGTCGGGGGAAGGTGGTGGCGGCGGCGCCAGGGCGCTGCGCGGCGAGGCCCCGAAGTGGTCGCTCCTGTAATTGCTCCCCTCCGTCGCGCCGGTGGTGGCGCCGCCGTGGGACGACTGCTGCTCCTCCTTCTTCCTCCGGGCGTCCAGGGCCCACCCCGCGACGGACTCGTGCAGGCCCGACCCAATCCCTTGCAGCTTGATGCCTCCGTCCATATGTGTAACGATGGCGTATAGTGGTAGAGTGACGTAGCTGCAGATCATTTGGATGAGCACACCAATAACAAGCCTAGAAATGGCGTACACCTTCTTCTCCATAATGCACGAGTCGAACCCGAATGTTACCAAGACCCAGATGAAAAAACCAATCTCGAAAGAGTTCTGGAACAGGATGAAATGGATCAGGTTGAGGACAATTTCAGGTCTGCCAAACCAGAAATGTTCCTTCGATGGCTTTACATAAGGAGTTCTCTCTGTTCCGTGTGATAATGATGCCACTGCTGCTGCCTCTTGAGCTAATCGGGTAATAATATGCTCTAGCTTTGCACCAACAACAAGCAGGAGAAACAGAGGCAAGAAAGCTAACCAGAAGTATGTATGCCATCCGTTTATATTCAGCAATAGGAAAAGGATGACAAAAAGCCACATGTACCAGCTGATACCAACTACTCTCTTAAAGTCATGTTCAAGAGCACGAATCAAGTACTTGTAGAAATTGAAGGATGGATGACTTGGGAAATGTTTCAAGCCGAATGCTGATCTAAGTGCTTTATAATCTGATTTACTCACAGAATCATGAAACTGCTTAAAGAAAGCAATTATCCAGCTTACAACAGCCAGCTTCATCCATAACCCCTTTGTTCGCTCACTGACAAATTCACCCTGTTGATTATGTGCAATACGCCCAGGTGTAGCATCTCTTTTTTGTAATTTCTGTTGCATTTCCTGTTGGATTTCTGTCTCCCAAAGCTTCCATTTTCTTATCTTCGCTCCACCAAGTAATATTGTTGTAGCACAGAACACAACATGGACCAAACCAAGTATAAATATGAAGATGTGCAGCTGATGCAATGCCTCCACTGATAACAGGGGAACTTCACCCTTTTTCTTGCAAAGCTTAACACCTTCTGAAAGCTGGTAAGTCTCTTTCTTGCATGGAAGCATCAAATGCATAGCATTTTCCGAAACACAAATACCAACAATGAAACCTTCAGAGAGGCTCAGGACGAAGGAAATGAATCCCAGAAGCATTAACTCTTCTTTTAGTCTCTCGAGAGCTGAATACAATGCCTTCTGATCTTTATGTTTCAAGAACTTGCCGAGGTGGTGGAGGAGGCGCTCGGCGGCGAGGGAGACGGAGACGATGGCGAAGCAGACGACGGCCACCACCCAGG

Explanation	CPC Score
noncoding	-1.1232

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0351700.1	6	24333037	T	C
Osa06LNT0351700.1	6	24333069	T	C
Osa06LNT0351700.1	6	24333131	T	C
Osa06LNT0351700.1	6	24333812	A	G
Osa06LNT0351700.1	6	24334842	T	A
Osa06LNT0351700.1	6	24334942	T	C
Osa06LNT0351700.1	6	24335845	A	G
Osa06LNT0351700.1	6	24336231	T	C
Osa06LNT0351700.1	6	24336594	T	A
Osa06LNT0351700.1	6	24337820	A	T
Osa06LNT0351700.1	6	24338158	T	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0351700.1	osa-miR5526	Translation	5.0	15.109	1	21
Osa06LNT0351700.1	osa-miR5809	Translation	4.5	22.026	1	20
Osa06LNT0351700.1	osa-miR1859	Translation	3.5	13.191	1	22
Osa06LNT0351700.1	osa-miR2093-3p	Cleavage	5.0	13.039	1	20
Osa06LNT0351700.1	osa-miR2093-3p	Translation	4.5	16.112	1	20
Osa06LNT0351700.1	osa-miR5489	Translation	4.5	24.294	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0351700.1	6	amy6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0351700.1	6	asv6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0351700.1	6	qDLR6-2	Resistance or Tolerance	Other soil stress tolerance	RM1340	RM5957
Osa06LNT0351700.1	6	tgw6.1	Physiological trait	Source activity	RG264	RM3
Osa06LNT0351700.1	6	nan	Morphological trait	Root	RM4447	RM5509
Osa06LNT0351700.1	6	ph6	Morphological trait	Dwarf	RZ667	RG653
Osa06LNT0351700.1	6	RPLD4	Physiological trait	Eating quality	RG424	RG172
Osa06LNT0351700.1	6	qLDLJ-6-1,2,3	Physiological trait	Source activity	RM217	RM3
Osa06LNT0351700.1	6	prt6.1	Resistance or Tolerance	Drought tolerance	R2549	RG716
Osa06LNT0351700.1	6	qGL-6	Morphological trait	Seed	R674	R2549
Osa06LNT0351700.1	6	gw6	Morphological trait	Panicle/flower	RG424	R2549
Osa06LNT0351700.1	6	nan	Physiological trait	Eating quality	RM253	RM162

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus